The config looks like this:
 input {
    jdbc {
        jdbc_connection_string => "jdbc:oracle:thin:@192.168.56.101:1521/MRO"
        jdbc_user => "user"
        jdbc_password => "password"
        jdbc_driver_library => "/vagrant/chef-repo/cookbooks/logstash/files/ojdbc14-10.2.0.1.0.jar" 
        jdbc_driver_class => "Java::oracle.jdbc.driver.OracleDriver"
        statement => "SELECT * from DS_AUDIT where START_TIME > :sql_last_value"
        schedule => "* * * * *"
        clean_run => "true"
        tracking_column => "START_TIME"
        tracking_column_type => "timestamp"
    }
}
filter {
  date {
    match => ["start_time", "yyyy-MM-dd'T'HH:mm:ss'.'SSS'Z'"]
    target => "@timestamp"
  }
}
output {
    elasticsearch {
        index => "sites"
        document_type => "site"
        hosts => "http://localhost:9200"
    }
}
output {
    stdout { codec => json_lines }
}
When I run my test, I get the following on stdout:
[2017-11-13T12:15:47,594][INFO ][logstash.outputs.elasticsearch] Elasticsearch pool URLs updated {:changes=>{:removed=>[], :added=>[http://localhost:9200/]}}
[2017-11-13T12:15:47,609][INFO ][logstash.outputs.elasticsearch] Running health check to see if an Elasticsearch connection is working {:healthcheck_url=>http://localhost:9200/, :path=>"/"}
[2017-11-13T12:15:47,843][WARN ][logstash.outputs.elasticsearch] Restored connection to ES instance {:url=>#<URI::HTTP:0x6090de40 URL:http://localhost:9200/>}
[2017-11-13T12:15:47,845][INFO ][logstash.outputs.elasticsearch] Using mapping template from {:path=>nil}
[2017-11-13T12:15:47,924][INFO ][logstash.outputs.elasticsearch] Attempting to install template {:manage_template=>{"template"=>"logstash-*", "version"=>50001, "settings"=>{"index.refresh_interval"=>"5s"}, "mappings"=>{"_default_"=>{"_all"=>{"enabled"=>true, "norms"=>false}, "dynamic_templates"=>[{"message_field"=>{"path_match"=>"message", "match_mapping_type"=>"string", "mapping"=>{"type"=>"text", "norms"=>false}}}, {"string_fields"=>{"match"=>"*", "match_mapping_type"=>"string", "mapping"=>{"type"=>"text", "norms"=>false, "fields"=>{"keyword"=>{"type"=>"keyword"}}}}}], "properties"=>{"@timestamp"=>{"type"=>"date", "include_in_all"=>false}, "@version"=>{"type"=>"keyword", "include_in_all"=>false}, "geoip"=>{"dynamic"=>true, "properties"=>{"ip"=>{"type"=>"ip"}, "location"=>{"type"=>"geo_point"}, "latitude"=>{"type"=>"half_float"}, "longitude"=>{"type"=>"half_float"}}}}}}}}
[2017-11-13T12:15:47,935][INFO ][logstash.outputs.elasticsearch] New Elasticsearch output {:class=>"LogStash::Outputs::ElasticSearch", :hosts=>[#<URI::HTTP:0x70b3004c URL:http://localhost:9200>]}
[2017-11-13T12:15:47,942][INFO ][logstash.pipeline        ] Starting pipeline {"id"=>"main", "pipeline.workers"=>2, "pipeline.batch.size"=>125, "pipeline.batch.delay"=>5, "pipeline.max_inflight"=>250}
[2017-11-13T12:15:49,436][INFO ][logstash.pipeline        ] Pipeline main started
[2017-11-13T12:15:49,569][INFO ][logstash.agent           ] Successfully started Logstash API endpoint {:port=>9600}
[2017-11-13T12:16:00,579][INFO ][logstash.inputs.jdbc     ] (0.107000s) SELECT * from DS_AUDIT where START_TIME > TIMESTAMP '1970-01-01 00:00:00.000000 +00:00'
{"user_name":null,"end_time":null,"audit_status":null,"tags":["_dateparsefailure"],"start_time":"2017-11-09T21:15:51.906Z","site":null,"@timestamp":"2017-11-13T17:16:00.676Z","application":"Interactive","method_name":null,"@version":"1","details":null,"method_class":null,"status":null}
^C[2017-11-13T12:16:30,048][WARN ][logstash.runner          ] SIGINT received. Shutting down the agent.
[2017-11-13T12:16:30,060][WARN ][logstash.agent           ] stopping pipeline {:id=>"main"}
The line that I get after the JDBC SELECT statement in the stdout, does not show up in the log file. I'm assuming that that is simply due to the fact the I have a stdout output stage in my pipeline.