With 46 inputs in your config, this problem is almost impossible to troubleshoot without a second machine to divide and conquer.
Move half the inputs plus the filters and output to the other machine. 23 each. If the fault occurs on both then split by technology tcp/udp on one and rest on the other. Do this until the fault stays on one machine. Keep moving inputs one by one from the fault machine to the good machine until the fault moves over. Move the last one back and move the next one - repeat until only the inputs that are creating the fault remain. Post that faulty config here.