Interesting fact is that your stacktraces point to a Lucene 3.x field RAM
size estimator method, which might have some yet not identified issues.
This indicates to me that you still have an index originating from an early
ES version (<0.90?)
If possible, I recommend to reindex data with 1.0.0.RC2, to benefit from a
fresh built Lucene 4.6.1 index.
Jörg
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