That is the issue. chown -R logstash: /var/lib/logstash/plugins/filters/
Fixed.
[2024-03-04T14:12:51,305][INFO ][logstash.filters.geoip.databasemanager] /var/lib/logstash/plugins/filters/geoip/1662379503 is deleted
[2024-03-04T14:12:51,370][INFO ][logstash.filters.geoip.databasemanager][main] By not manually configuring a database path with `database =>`, you accepted and agreed MaxMind EULA. For more details please visit https://www.maxmind.com/en/geolite2/eula
[2024-03-04T14:12:51,372][INFO ][logstash.filters.geoip ][main] Using geoip database {:path=>"/var/lib/logstash/plugins/filters/geoip/1709557966/GeoLite2-City.mmdb"}
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