Error Writing data to ElasticSearch from PIG

ravimbhatt · April 24, 2014, 4:35pm

Hello All,

I have a very simple pig script.

set default_parallel 8;

REGISTER 'elasticsearch-hadoop-pig-1.3.0.M3.jar';

sets = LOAD 'wasb://yyyyyy@xxxxxxxxxxxxxxxx' USING PigStorage('\t') AS
(itemid:chararray, list:chararray);
a = LIMIT sets 100;
b = foreach a generate itemid;
STORE b INTO 'indexOne/iis' USING
org.elasticsearch.hadoop.pig.EsStorage('es.nodes=ec2-xx-xx-xxx-xxx.eu-west-1.compute.amazonaws.com','es.mapping.names=itemid:@itemid','es.resource=indexOne/iis');

I get below error in my reducer:

java.lang.NullPointerException
at javax.xml.bind.DatatypeConverterImpl.guessLength(DatatypeConverterImpl.java:653)
at javax.xml.bind.DatatypeConverterImpl._parseBase64Binary(DatatypeConverterImpl.java:691)
at javax.xml.bind.DatatypeConverterImpl.parseBase64Binary(DatatypeConverterImpl.java:433)
at javax.xml.bind.DatatypeConverter.parseBase64Binary(DatatypeConverter.java:342)
at org.elasticsearch.hadoop.util.IOUtils.deserializeFromBase64(IOUtils.java:56)
at org.elasticsearch.hadoop.pig.EsStorage.prepareToWrite(EsStorage.java:178)
at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat$PigRecordWriter.(PigOutputFormat.java:125)
at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat.getRecordWriter(PigOutputFormat.java:86)
at org.apache.hadoop.mapred.ReduceTask$NewTrackingRecordWriter.(ReduceTask.java:568)
at org.apache.hadoop.mapred.ReduceTask.runNewReducer(ReduceTask.java:637)
at org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:418)
at org.apache.hadoop.mapred.Child$4.run(Child.java:266)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1233)
at org.apache.hadoop.mapred.Child.main(Child.java:260)

Am i missing something basic here?

Thanks!

Ravi

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costin · April 24, 2014, 5:06pm

Hi,

You're not - it looks like a bug inside the base64 function within the JDK (note the input is generated by the same
class). Out of curiosity what JDK version are you using?

Cheers,

On 4/24/14 7:35 PM, ravimbhatt@gmail.com wrote:

Hello All,

I have a very simple pig script.

set default_parallel 8;

REGISTER 'elasticsearch-hadoop-pig-1.3.0.M3.jar';

sets = LOAD 'wasb://yyyyyy@xxxxxxxxxxxxxxxx' USING PigStorage('\t') AS (itemid:chararray, list:chararray);
a = LIMIT sets 100;
b = foreach a generate itemid;
STORE b INTO 'indexOne/iis' USING
org.elasticsearch.hadoop.pig.EsStorage('es.nodes=ec2-xx-xx-xxx-xxx.eu-west-1.compute.amazonaws.com','es.mapping.names=itemid:@itemid','es.resource=indexOne/iis');

I get below error in my reducer:

java.lang.NullPointerException
at javax.xml.bind.DatatypeConverterImpl.guessLength(DatatypeConverterImpl.java:653)
at javax.xml.bind.DatatypeConverterImpl._parseBase64Binary(DatatypeConverterImpl.java:691)
at javax.xml.bind.DatatypeConverterImpl.parseBase64Binary(DatatypeConverterImpl.java:433)
at javax.xml.bind.DatatypeConverter.parseBase64Binary(DatatypeConverter.java:342)
at org.elasticsearch.hadoop.util.IOUtils.deserializeFromBase64(IOUtils.java:56)
at org.elasticsearch.hadoop.pig.EsStorage.prepareToWrite(EsStorage.java:178)
at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat$PigRecordWriter.(PigOutputFormat.java:125)
at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat.getRecordWriter(PigOutputFormat.java:86)
at org.apache.hadoop.mapred.ReduceTask$NewTrackingRecordWriter.(ReduceTask.java:568)
at org.apache.hadoop.mapred.ReduceTask.runNewReducer(ReduceTask.java:637)
at org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:418)
at org.apache.hadoop.mapred.Child$4.run(Child.java:266)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1233)
at org.apache.hadoop.mapred.Child.main(Child.java:260)

Am i missing something basic here?

Thanks!

Ravi

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ravimbhatt · April 24, 2014, 5:09pm

Thanks for your reply.

My java version is "openjdk version "1.7.0-internal"

Do you suggest trying a different version of java?

On Thursday, 24 April 2014 18:06:03 UTC+1, Costin Leau wrote:

Hi,

You're not - it looks like a bug inside the base64 function within the JDK
(note the input is generated by the same
class). Out of curiosity what JDK version are you using?

Cheers,

On 4/24/14 7:35 PM, ravim...@gmail.com <javascript:> wrote:

Hello All,

I have a very simple pig script.

set default_parallel 8;

REGISTER 'elasticsearch-hadoop-pig-1.3.0.M3.jar';

sets = LOAD 'wasb://yyyyyy@xxxxxxxxxxxxxxxx' USING PigStorage('\t') AS
(itemid:chararray, list:chararray);
a = LIMIT sets 100;
b = foreach a generate itemid;
STORE b INTO 'indexOne/iis' USING
org.elasticsearch.hadoop.pig.EsStorage('es.nodes=
ec2-xx-xx-xxx-xxx.eu-west-1.compute.amazonaws.com','es.mapping.names=itemid:@itemid','es.resource=indexOne/iis');

I get below error in my reducer:

java.lang.NullPointerException
at
javax.xml.bind.DatatypeConverterImpl.guessLength(DatatypeConverterImpl.java:653)
    at 
javax.xml.bind.DatatypeConverterImpl._parseBase64Binary(DatatypeConverterImpl.java:691)
    at 
javax.xml.bind.DatatypeConverterImpl.parseBase64Binary(DatatypeConverterImpl.java:433)
    at 
javax.xml.bind.DatatypeConverter.parseBase64Binary(DatatypeConverter.java:342)
    at 
org.elasticsearch.hadoop.util.IOUtils.deserializeFromBase64(IOUtils.java:56)
    at 
org.elasticsearch.hadoop.pig.EsStorage.prepareToWrite(EsStorage.java:178)
    at 
org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat$PigRecordWriter.(PigOutputFormat.java:125)
    at 
org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat.getRecordWriter(PigOutputFormat.java:86)
    at 
org.apache.hadoop.mapred.ReduceTask$NewTrackingRecordWriter.(ReduceTask.java:568)
    at 
org.apache.hadoop.mapred.ReduceTask.runNewReducer(ReduceTask.java:637)
    at org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:418) 
    at org.apache.hadoop.mapred.Child$4.run(Child.java:266) 
    at java.security.AccessController.doPrivileged(Native Method) 
    at javax.security.auth.Subject.doAs(Subject.java:415) 
    at 
org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1233)
    at org.apache.hadoop.mapred.Child.main(Child.java:260) 
Am i missing something basic here?

Thanks!

Ravi

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costin · April 24, 2014, 5:26pm

I've committed a quick fix and pushed a dev build [1] - I recommend trying that instead which should work on your
platform as well.

[1] Elasticsearch Platform — Find real-time answers at scale | Elastic

P.S. For both Hadoop and ES, Sun/Oracle JDK is recommended.

On 4/24/14 8:09 PM, ravimbhatt@gmail.com wrote:

Thanks for your reply.

My java version is "openjdk version "1.7.0-internal"

Do you suggest trying a different version of java?

On Thursday, 24 April 2014 18:06:03 UTC+1, Costin Leau wrote:

Hi,

You're not - it looks like a bug inside the base64 function within the JDK (note the input is generated by the same
class). Out of curiosity what JDK version are you using?

Cheers,

On 4/24/14 7:35 PM, ravim...@gmail.com <javascript:> wrote:
> Hello All,
>
> I have a very simple pig script.
>
> set default_parallel 8;
>
> REGISTER 'elasticsearch-hadoop-pig-1.3.0.M3.jar';
>
> sets = LOAD 'wasb://yyyyyy@xxxxxxxxxxxxxxxx' USING PigStorage('\t')  AS (itemid:chararray, list:chararray);
> a = LIMIT sets 100;
> b = foreach a generate itemid;
> STORE b INTO 'indexOne/iis' USING
> org.elasticsearch.hadoop.pig.EsStorage('es.nodes=ec2-xx-xx-xxx-xxx.eu-west-1.compute.amazonaws.com
<http://ec2-xx-xx-xxx-xxx.eu-west-1.compute.amazonaws.com>','es.mapping.names=itemid:@itemid','es.resource=indexOne/iis');

>
> I get below error in my reducer:
>
> java.lang.NullPointerException
>         at javax.xml.bind.DatatypeConverterImpl.guessLength(DatatypeConverterImpl.java:653)
>         at javax.xml.bind.DatatypeConverterImpl._parseBase64Binary(DatatypeConverterImpl.java:691)
>         at javax.xml.bind.DatatypeConverterImpl.parseBase64Binary(DatatypeConverterImpl.java:433)
>         at javax.xml.bind.DatatypeConverter.parseBase64Binary(DatatypeConverter.java:342)
>         at org.elasticsearch.hadoop.util.IOUtils.deserializeFromBase64(IOUtils.java:56)
>         at org.elasticsearch.hadoop.pig.EsStorage.prepareToWrite(EsStorage.java:178)
>         at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat$PigRecordWriter.<init>(PigOutputFormat.java:125)
>         at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat.getRecordWriter(PigOutputFormat.java:86)
>         at org.apache.hadoop.mapred.ReduceTask$NewTrackingRecordWriter.<init>(ReduceTask.java:568)
>         at org.apache.hadoop.mapred.ReduceTask.runNewReducer(ReduceTask.java:637)
>         at org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:418)
>         at org.apache.hadoop.mapred.Child$4.run(Child.java:266)
>         at java.security.AccessController.doPrivileged(Native Method)
>         at javax.security.auth.Subject.doAs(Subject.java:415)
>         at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1233)
>         at org.apache.hadoop.mapred.Child.main(Child.java:260)
>
>
> Am i missing something basic here?
>
>
> Thanks!
>
> Ravi
>
>
>
>
> --
> You received this message because you are subscribed to the Google Groups "elasticsearch" group.
> To unsubscribe from this group and stop receiving emails from it, send an email to
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<https://groups.google.com/d/msgid/elasticsearch/e6c6ba6d-012b-49b0-b6a7-785e001d34b9%40googlegroups.com>
> <https://groups.google.com/d/msgid/elasticsearch/e6c6ba6d-012b-49b0-b6a7-785e001d34b9%40googlegroups.com?utm_medium=email&utm_source=footer
<https://groups.google.com/d/msgid/elasticsearch/e6c6ba6d-012b-49b0-b6a7-785e001d34b9%40googlegroups.com?utm_medium=email&utm_source=footer>>.

> For more options, visithttps://groups.google.com/d/optout <https://groups.google.com/d/optout>.

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ravimbhatt · April 24, 2014, 9:22pm

Hi Costin,

Thanks for the fix. I tried that and now i get a new error:

java.lang.NullPointerException
at org.codehaus.jackson.node.TextNode.getBinaryValue(TextNode.java:69)
at org.codehaus.jackson.node.TextNode.getBinaryValue(TextNode.java:160)
at org.elasticsearch.hadoop.util.IOUtils.deserializeFromBase64(IOUtils.java:71)
at org.elasticsearch.hadoop.pig.EsStorage.prepareToWrite(EsStorage.java:178)
at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat$PigRecordWriter.(PigOutputFormat.java:125)
at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat.getRecordWriter(PigOutputFormat.java:86)
at org.apache.hadoop.mapred.ReduceTask$NewTrackingRecordWriter.(ReduceTask.java:568)
at org.apache.hadoop.mapred.ReduceTask.runNewReducer(ReduceTask.java:637)
at org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:418)
at org.apache.hadoop.mapred.Child$4.run(Child.java:266)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1233)
at org.apache.hadoop.mapred.Child.main(Child.java:260)

may be missing some more null checks in the code? Can you please help?

Thanks!

Ravi

On Thursday, 24 April 2014 18:26:13 UTC+1, Costin Leau wrote:

I've committed a quick fix and pushed a dev build [1] - I recommend trying
that instead which should work on your
platform as well.

[1]
Elasticsearch Platform — Find real-time answers at scale | Elastic

P.S. For both Hadoop and ES, Sun/Oracle JDK is recommended.

On 4/24/14 8:09 PM, ravim...@gmail.com <javascript:> wrote:
Thanks for your reply.

My java version is "openjdk version "1.7.0-internal"

Do you suggest trying a different version of java?

On Thursday, 24 April 2014 18:06:03 UTC+1, Costin Leau wrote:
Hi, 

You're not - it looks like a bug inside the base64 function within 
the JDK (note the input is generated by the same
class). Out of curiosity what JDK version are you using? 

Cheers, 

On 4/24/14 7:35 PM, ravim...@gmail.com <javascript:> wrote: 
> Hello All, 
> 
> I have a very simple pig script. 
> 
> set default_parallel 8; 
> 
> REGISTER 'elasticsearch-hadoop-pig-1.3.0.M3.jar'; 
> 
> sets = LOAD 'wasb://yyyyyy@xxxxxxxxxxxxxxxx' USING 
PigStorage('\t') AS (itemid:chararray, list:chararray);
> a = LIMIT sets 100; 
> b = foreach a generate itemid; 
> STORE b INTO 'indexOne/iis' USING 
> org.elasticsearch.hadoop.pig.EsStorage('es.nodes=
ec2-xx-xx-xxx-xxx.eu-west-1.compute.amazonaws.com
<http://ec2-xx-xx-xxx-xxx.eu-west-1.compute.amazonaws.com>','es.mapping.names=itemid:@itemid','es.resource=indexOne/iis'); 
> 
> I get below error in my reducer: 
> 
> java.lang.NullPointerException 
>         at 
javax.xml.bind.DatatypeConverterImpl.guessLength(DatatypeConverterImpl.java:653)
>         at 
javax.xml.bind.DatatypeConverterImpl._parseBase64Binary(DatatypeConverterImpl.java:691)
>         at 
javax.xml.bind.DatatypeConverterImpl.parseBase64Binary(DatatypeConverterImpl.java:433)
>         at 
javax.xml.bind.DatatypeConverter.parseBase64Binary(DatatypeConverter.java:342)
>         at 
org.elasticsearch.hadoop.util.IOUtils.deserializeFromBase64(IOUtils.java:56)
>         at 
org.elasticsearch.hadoop.pig.EsStorage.prepareToWrite(EsStorage.java:178)
>         at 
org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat$PigRecordWriter.(PigOutputFormat.java:125)
>         at 
org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat.getRecordWriter(PigOutputFormat.java:86)
>         at 
org.apache.hadoop.mapred.ReduceTask$NewTrackingRecordWriter.(ReduceTask.java:568)
>         at 
org.apache.hadoop.mapred.ReduceTask.runNewReducer(ReduceTask.java:637)
>         at 
org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:418)
>         at org.apache.hadoop.mapred.Child$4.run(Child.java:266) 
>         at java.security.AccessController.doPrivileged(Native 
Method)
>         at javax.security.auth.Subject.doAs(Subject.java:415) 
>         at 
org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1233)
>         at org.apache.hadoop.mapred.Child.main(Child.java:260) 
> 
> 
> Am i missing something basic here? 
> 
> 
> Thanks! 
> 
> Ravi 
> 
> 
> 
> 
> -- 
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Groups "elasticsearch" group.
> To unsubscribe from this group and stop receiving emails from it, 
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<
https://groups.google.com/d/msgid/elasticsearch/e6c6ba6d-012b-49b0-b6a7-785e001d34b9%40googlegroups.com>
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> For more options, visithttps://groups.google.com/d/optout <
https://groups.google.com/d/optout>.
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costin · April 25, 2014, 1:15pm

Hi,

I've pushed another fix however it's probably just a band-aid. For some reason your Pig engine does not set the schema
(from b) on the OutputWriter.
I've tried reproducing the error but I couldn't - it would be great if you could join the IRC 1 to track
down the source of the problem.
By the way, what is the Pig version that you are using?

Cheers,

[1] Elasticsearch Platform — Find real-time answers at scale | Elastic

On 4/25/14 12:22 AM, ravimbhatt@gmail.com wrote:

Hi Costin,

Thanks for the fix. I tried that and now i get a new error:

java.lang.NullPointerException
at org.codehaus.jackson.node.TextNode.getBinaryValue(TextNode.java:69)
at org.codehaus.jackson.node.TextNode.getBinaryValue(TextNode.java:160)
at org.elasticsearch.hadoop.util.IOUtils.deserializeFromBase64(IOUtils.java:71)
at org.elasticsearch.hadoop.pig.EsStorage.prepareToWrite(EsStorage.java:178)
at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat$PigRecordWriter.(PigOutputFormat.java:125)
at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat.getRecordWriter(PigOutputFormat.java:86)
at org.apache.hadoop.mapred.ReduceTask$NewTrackingRecordWriter.(ReduceTask.java:568)
at org.apache.hadoop.mapred.ReduceTask.runNewReducer(ReduceTask.java:637)
at org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:418)
at org.apache.hadoop.mapred.Child$4.run(Child.java:266)
at java.security.AccessController.doPrivileged(Native Method)
at javax.security.auth.Subject.doAs(Subject.java:415)
at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1233)
at org.apache.hadoop.mapred.Child.main(Child.java:260)

may be missing some more null checks in the code? Can you please help?

Thanks!

Ravi

On Thursday, 24 April 2014 18:26:13 UTC+1, Costin Leau wrote:

I've committed a quick fix and pushed a dev build [1] - I recommend trying that instead which should work on your
platform as well.

[1] http://www.elasticsearch.org/guide/en/elasticsearch/hadoop/current/install.html#download-dev
<http://www.elasticsearch.org/guide/en/elasticsearch/hadoop/current/install.html#download-dev>

P.S. For both Hadoop and ES, Sun/Oracle JDK is recommended.

On 4/24/14 8:09 PM, ravim...@gmail.com <javascript:> wrote:
> Thanks for your reply.
>
> My java version is "openjdk version "1.7.0-internal"
>
> Do you suggest trying a different version of java?
>
> On Thursday, 24 April 2014 18:06:03 UTC+1, Costin Leau wrote:
>
>     Hi,
>
>     You're not - it looks like a bug inside the base64 function within the JDK (note the input is generated by the same
>     class). Out of curiosity what JDK version are you using?
>
>     Cheers,
>
>     On 4/24/14 7:35 PM,ravim...@gmail.com <javascript:> wrote:
>     > Hello All,
>     >
>     > I have a very simple pig script.
>     >
>     > set default_parallel 8;
>     >
>     > REGISTER 'elasticsearch-hadoop-pig-1.3.0.M3.jar';
>     >
>     > sets = LOAD 'wasb://yyyyyy@xxxxxxxxxxxxxxxx' USING PigStorage('\t')  AS (itemid:chararray, list:chararray);
>     > a = LIMIT sets 100;
>     > b = foreach a generate itemid;
>     > STORE b INTO 'indexOne/iis' USING
>     > org.elasticsearch.hadoop.pig.EsStorage('es.nodes=ec2-xx-xx-xxx-xxx.eu-west-1.compute.amazonaws.com
<http://ec2-xx-xx-xxx-xxx.eu-west-1.compute.amazonaws.com>
>     <http://ec2-xx-xx-xxx-xxx.eu-west-1.compute.amazonaws.com
<http://ec2-xx-xx-xxx-xxx.eu-west-1.compute.amazonaws.com>>','es.mapping.names=itemid:@itemid','es.resource=indexOne/iis');

>
>     >
>     > I get below error in my reducer:
>     >
>     > java.lang.NullPointerException
>     >         at javax.xml.bind.DatatypeConverterImpl.guessLength(DatatypeConverterImpl.java:653)
>     >         at javax.xml.bind.DatatypeConverterImpl._parseBase64Binary(DatatypeConverterImpl.java:691)
>     >         at javax.xml.bind.DatatypeConverterImpl.parseBase64Binary(DatatypeConverterImpl.java:433)
>     >         at javax.xml.bind.DatatypeConverter.parseBase64Binary(DatatypeConverter.java:342)
>     >         at org.elasticsearch.hadoop.util.IOUtils.deserializeFromBase64(IOUtils.java:56)
>     >         at org.elasticsearch.hadoop.pig.EsStorage.prepareToWrite(EsStorage.java:178)
>     >         at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat$PigRecordWriter.<init>(PigOutputFormat.java:125)
>     >         at org.apache.pig.backend.hadoop.executionengine.mapReduceLayer.PigOutputFormat.getRecordWriter(PigOutputFormat.java:86)
>     >         at org.apache.hadoop.mapred.ReduceTask$NewTrackingRecordWriter.<init>(ReduceTask.java:568)
>     >         at org.apache.hadoop.mapred.ReduceTask.runNewReducer(ReduceTask.java:637)
>     >         at org.apache.hadoop.mapred.ReduceTask.run(ReduceTask.java:418)
>     >         at org.apache.hadoop.mapred.Child$4.run(Child.java:266)
>     >         at java.security.AccessController.doPrivileged(Native Method)
>     >         at javax.security.auth.Subject.doAs(Subject.java:415)
>     >         at org.apache.hadoop.security.UserGroupInformation.doAs(UserGroupInformation.java:1233)
>     >         at org.apache.hadoop.mapred.Child.main(Child.java:260)
>     >
>     >
>     > Am i missing something basic here?
>     >
>     >
>     > Thanks!
>     >
>     > Ravi
>     >
>     >
>     >
>     >
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>
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