So yeah that got rid of all the errors. The following is my log output with bits redacted but it just completely disregards the first AWS module defined in the config:
timestamp,message
1640627035122,2021-12-27T17:43:55.122Z INFO instance/beat.go:686 Home path: [/usr/share/filebeat] Config path: [/usr/share/filebeat] Data path: [/usr/share/filebeat/data] Logs path: [/usr/share/filebeat/logs] Hostfs Path: [/]
1640627035130,2021-12-27T17:43:55.130Z INFO instance/beat.go:694 Beat ID: 995f62e2-a24a-4ce2-99c3-62b164ab37ad
1640627035130,2021-12-27T17:43:55.130Z INFO [seccomp] seccomp/seccomp.go:124 Syscall filter successfully installed
1640627035130,"2021-12-27T17:43:55.130Z INFO [beat] instance/beat.go:1040 Beat info {""system_info"": {""beat"": {""path"": {""config"": ""/usr/share/filebeat"", ""data"": ""/usr/share/filebeat/data"", ""home"": ""/usr/share/filebeat"", ""logs"": ""/usr/share/filebeat/logs""}, ""type"": ""filebeat"", ""uuid"": ""995f62e2-a24a-4ce2-99c3-62b164ab37ad""}}}"
1640627035130,"2021-12-27T17:43:55.130Z INFO [beat] instance/beat.go:1049 Build info {""system_info"": {""build"": {""commit"": ""7e56c4a053a2fe26c0cac168dd974780428a2aa6"", ""libbeat"": ""7.16.1"", ""time"": ""2021-12-11T01:49:16.000Z"", ""version"": ""7.16.1""}}}"
1640627035130,"2021-12-27T17:43:55.130Z INFO [beat] instance/beat.go:1052 Go runtime info {""system_info"": {""go"": {""os"":""linux"",""arch"":""amd64"",""max_procs"":2,""version"":""go1.17.2""}}}"
1640627035131,"2021-12-27T17:43:55.131Z INFO [beat] instance/beat.go:1056 Host info {""system_info"": {""host"": {""architecture"":""x86_64"",""boot_time"":""2021-12-27T17:40:41Z"",""containerized"":false,""name"":""*removed*"",""ip"":[""127.0.0.1/8"",""::1/128"",""169.254.172.2/22"",""fe80::2c65:83ff:feac:7d11/64"",""*internalip*"",""fe80::825:59ff:fe9f:da58/64""],""kernel_version"":""4.14.252-195.483.amzn2.x86_64"",""mac"":[""0a:58:a9:fe:ac:02"",""0a:25:59:9f:da:58""],""os"":{""type"":""linux"",""family"":""redhat"",""platform"":""centos"",""name"":""CentOS Linux"",""version"":""7 (Core)"",""major"":7,""minor"":9,""patch"":2009,""codename"":""Core""},""timezone"":""UTC"",""timezone_offset_sec"":0,""id"":""9fcaada5ef8a36e0af98f82e5022a01f""}}}"
1640627035131,"2021-12-27T17:43:55.131Z INFO [beat] instance/beat.go:1085 Process info {""system_info"": {""process"": {""capabilities"": {""inheritable"":[""chown"",""dac_override"",""fowner"",""fsetid"",""kill"",""setgid"",""setuid"",""setpcap"",""net_bind_service"",""net_raw"",""sys_chroot"",""mknod"",""audit_write"",""setfcap""],""permitted"":null,""effective"":null,""bounding"":[""chown"",""dac_override"",""fowner"",""fsetid"",""kill"",""setgid"",""setuid"",""setpcap"",""net_bind_service"",""net_raw"",""sys_chroot"",""mknod"",""audit_write"",""setfcap""],""ambient"":null}, ""cwd"": ""/usr/share/filebeat"", ""exe"": ""/usr/share/filebeat/filebeat"", ""name"": ""filebeat"", ""pid"": 10, ""ppid"": 1, ""seccomp"": {""mode"":""filter"",""no_new_privs"":true}, ""start_time"": ""2021-12-27T17:43:54.130Z""}}}"
1640627035131,2021-12-27T17:43:55.131Z INFO instance/beat.go:328 Setup Beat: filebeat; Version: 7.16.1
1640627035132,2021-12-27T17:43:55.132Z INFO [publisher] pipeline/module.go:113 Beat name: *removed*
1640627035135,"2021-12-27T17:43:55.135Z INFO beater/filebeat.go:118 Enabled modules/filesets: aws (elb, vpcflow), ()"
1640627035136,"2021-12-27T17:43:55.136Z WARN beater/filebeat.go:202 Filebeat is unable to load the ingest pipelines for the configured modules because the Elasticsearch output is not configured/enabled. If you have already loaded the ingest pipelines or are using Logstash pipelines, you can ignore this warning."
1640627035136,2021-12-27T17:43:55.136Z INFO [monitoring] log/log.go:142 Starting metrics logging every 30s
1640627035136,2021-12-27T17:43:55.136Z INFO instance/beat.go:492 filebeat start running.
1640627035136,"2021-12-27T17:43:55.136Z WARN beater/filebeat.go:231 Filebeat is unable to load the ingest pipelines for the configured modules because the Elasticsearch output is not configured/enabled. If you have already loaded the ingest pipelines or are using Logstash pipelines, you can ignore this warning."
1640627035139,2021-12-27T17:43:55.139Z INFO memlog/store.go:119 Loading data file of '/usr/share/filebeat/data/registry/filebeat' succeeded. Active transaction id=0
1640627035139,2021-12-27T17:43:55.139Z INFO memlog/store.go:124 Finished loading transaction log file for '/usr/share/filebeat/data/registry/filebeat'. Active transaction id=0
1640627035139,"2021-12-27T17:43:55.139Z WARN beater/filebeat.go:411 Filebeat is unable to load the ingest pipelines for the configured modules because the Elasticsearch output is not configured/enabled. If you have already loaded the ingest pipelines or are using Logstash pipelines, you can ignore this warning."
1640627035141,2021-12-27T17:43:55.139Z INFO [registrar] registrar/registrar.go:109 States Loaded from registrar: 0
1640627035141,2021-12-27T17:43:55.139Z INFO [crawler] beater/crawler.go:71 Loading Inputs: 4
1640627035141,2021-12-27T17:43:55.139Z INFO [crawler] beater/crawler.go:141 Starting input (ID: 16607647092026520318)
1640627035141,"2021-12-27T17:43:55.140Z INFO [input.aws-s3] compat/compat.go:111 Input aws-s3 starting {""id"": ""E67A370A034A32FE""}"
1640627035142,"2021-12-27T17:43:55.140Z INFO [input.aws-s3] awss3/input.go:176 AWS api_timeout is set to 2m0s. {""id"": ""E67A370A034A32FE"", ""queue_url"": ""*prod-waf-logs-queue-url*""}"
1640627035142,"2021-12-27T17:43:55.140Z INFO [input.aws-s3] awss3/input.go:177 AWS region is set to *region*. {""id"": ""E67A370A034A32FE"", ""queue_url"": ""*prod-waf-logs-queue-url*""}"
1640627035142,"2021-12-27T17:43:55.140Z INFO [input.aws-s3] awss3/input.go:178 AWS SQS visibility_timeout is set to 5m0s. {""id"": ""E67A370A034A32FE"", ""queue_url"": ""*prod-waf-logs-queue-url*""}"
1640627035142,"2021-12-27T17:43:55.140Z INFO [input.aws-s3] awss3/input.go:179 AWS SQS max_number_of_messages is set to 5. {""id"": ""E67A370A034A32FE"", ""queue_url"": ""*prod-waf-logs-queue-url*""}"
1640627035142,2021-12-27T17:43:55.140Z INFO [crawler] beater/crawler.go:141 Starting input (ID: 6799548206363597317)
1640627035142,2021-12-27T17:43:55.140Z INFO [crawler] beater/crawler.go:141 Starting input (ID: 12161307968425761396)
1640627035142,"2021-12-27T17:43:55.140Z INFO [input.aws-s3] compat/compat.go:111 Input aws-s3 starting {""id"": ""5E5CD91171725A05""}"
1640627035142,2021-12-27T17:43:55.141Z INFO [crawler] beater/crawler.go:141 Starting input (ID: 6814296712940442267)
1640627035142,"2021-12-27T17:43:55.141Z INFO [input.aws-s3] awss3/input.go:176 AWS api_timeout is set to 2m0s. {""id"": ""5E5CD91171725A05"", ""queue_url"": ""*dev-waf-logs-queue-url*""}"
1640627035142,"2021-12-27T17:43:55.141Z INFO [input.aws-s3] awss3/input.go:177 AWS region is set to *region*. {""id"": ""5E5CD91171725A05"", ""queue_url"": ""*dev-waf-logs-queue-url*""}"
1640627035142,"2021-12-27T17:43:55.141Z INFO [input.aws-s3] compat/compat.go:111 Input aws-s3 starting {""id"": ""5E913EC1B8ED529B""}"
1640627035142,"2021-12-27T17:43:55.141Z INFO [input.aws-s3] awss3/input.go:178 AWS SQS visibility_timeout is set to 5m0s. {""id"": ""5E5CD91171725A05"", ""queue_url"": ""*dev-waf-logs-queue-url*""}"
1640627035142,"2021-12-27T17:43:55.141Z INFO [input.aws-s3] awss3/input.go:179 AWS SQS max_number_of_messages is set to 5. {""id"": ""5E5CD91171725A05"", ""queue_url"": ""*dev-waf-logs-queue-url*""}"
1640627035142,"2021-12-27T17:43:55.141Z INFO [input.aws-s3] awss3/input.go:176 AWS api_timeout is set to 2m0s. {""id"": ""5E913EC1B8ED529B"", ""queue_url"": ""*dev-vpc-logs-queue-url*""}"
1640627035142,"2021-12-27T17:43:55.141Z INFO [input.aws-s3] awss3/input.go:177 AWS region is set to *region*. {""id"": ""5E913EC1B8ED529B"", ""queue_url"": ""*dev-vpc-logs-queue-url*""}"
1640627035142,"2021-12-27T17:43:55.141Z INFO [input.aws-s3] awss3/input.go:178 AWS SQS visibility_timeout is set to 5m0s. {""id"": ""5E913EC1B8ED529B"", ""queue_url"": ""*dev-vpc-logs-queue-url*""}"
1640627035142,"2021-12-27T17:43:55.141Z INFO [input.aws-s3] awss3/input.go:179 AWS SQS max_number_of_messages is set to 5. {""id"": ""5E913EC1B8ED529B"", ""queue_url"": ""*dev-vpc-logs-queue-url*""}"
1640627035142,2021-12-27T17:43:55.141Z INFO [crawler] beater/crawler.go:108 Loading and starting Inputs completed. Enabled inputs: 4
1640627035142,"2021-12-27T17:43:55.141Z INFO [input.aws-s3] compat/compat.go:111 Input aws-s3 starting {""id"": ""A8C5A529F6251A74""}"
1640627035142,"2021-12-27T17:43:55.141Z INFO [input.aws-s3] awss3/input.go:176 AWS api_timeout is set to 2m0s. {""id"": ""A8C5A529F6251A74"", ""queue_url"": ""*dev-alb-logs-queue-url*""}"
1640627035142,"2021-12-27T17:43:55.141Z INFO [input.aws-s3] awss3/input.go:177 AWS region is set to *region*. {""id"": ""A8C5A529F6251A74"", ""queue_url"": ""*dev-alb-logs-queue-url*""}"
1640627035142,"2021-12-27T17:43:55.141Z INFO [input.aws-s3] awss3/input.go:178 AWS SQS visibility_timeout is set to 5m0s. {""id"": ""A8C5A529F6251A74"", ""queue_url"": ""*dev-alb-logs-queue-url*""}"
1640627035142,"2021-12-27T17:43:55.141Z INFO [input.aws-s3] awss3/input.go:179 AWS SQS max_number_of_messages is set to 5. {""id"": ""A8C5A529F6251A74"", ""queue_url"": ""*dev-alb-logs-queue-url*""}"
1640627065143,"2021-12-27T17:44:25.143Z INFO [monitoring] log/log.go:184 Non-zero metrics in the last 30s {""monitoring"": {""metrics"": {""beat"":{""cgroup"":{""cpu"":{""cfs"":{""period"":{""us"":100000}},""id"":""/""},""cpuacct"":{""id"":""/"",""total"":{""ns"":418423008}},""memory"":{""id"":""/"",""mem"":{""limit"":{""bytes"":536870912},""usage"":{""bytes"":53551104}}}},""cpu"":{""system"":{""ticks"":50,""time"":{""ms"":55}},""total"":{""ticks"":200,""time"":{""ms"":217},""value"":200},""user"":{""ticks"":150,""time"":{""ms"":162}}},""handles"":{""limit"":{""hard"":4096,""soft"":1024},""open"":17},""info"":{""ephemeral_id"":""ca6fdfa1-29eb-4833-9071-af4bd109691b"",""uptime"":{""ms"":30421},""version"":""7.16.1""},""memstats"":{""gc_next"":25565408,""memory_alloc"":21530808,""memory_sys"":41501704,""memory_total"":62419096,""rss"":128552960},""runtime"":{""goroutines"":48}},""filebeat"":{""harvester"":{""open_files"":0,""running"":0}},""libbeat"":{""config"":{""module"":{""running"":0}},""output"":{""events"":{""active"":0},""type"":""logstash""},""pipeline"":{""clients"":4,""events"":{""active"":0},""queue"":{""max_events"":4096}}},""registrar"":{""states"":{""current"":0}},""system"":{""cpu"":{""cores"":2},""load"":{""1"":0.2,""15"":0.06,""5"":0.13,""norm"":{""1"":0.1,""15"":0.03,""5"":0.065}}}}}}"
1640627095142,"2021-12-27T17:44:55.141Z INFO [monitoring] log/log.go:184 Non-zero metrics in the last 30s {""monitoring"": {""metrics"": {""beat"":{""cgroup"":{""cpuacct"":{""total"":{""ns"":24912343}},""memory"":{""mem"":{""usage"":{""bytes"":-3579904}}}},""cpu"":{""system"":{""ticks"":50,""time"":{""ms"":3}},""total"":{""ticks"":230,""time"":{""ms"":24},""value"":230},""user"":{""ticks"":180,""time"":{""ms"":21}}},""handles"":{""limit"":{""hard"":4096,""soft"":1024},""open"":17},""info"":{""ephemeral_id"":""ca6fdfa1-29eb-4833-9071-af4bd109691b"",""uptime"":{""ms"":60414},""version"":""7.16.1""},""memstats"":{""gc_next"":21874528,""memory_alloc"":11208768,""memory_sys"":262144,""memory_total"":63344408,""rss"":125206528},""runtime"":{""goroutines"":48}},""filebeat"":{""harvester"":{""open_files"":0,""running"":0}},""libbeat"":{""config"":{""module"":{""running"":0}},""output"":{""events"":{""active"":0}},""pipeline"":{""clients"":4,""events"":{""active"":0}}},""registrar"":{""states"":{""current"":0}},""system"":{""load"":{""1"":0.12,""15"":0.05,""5"":0.12,""norm"":{""1"":0.06,""15"":0.025,""5"":0.06}}}}}}"
1640627125142,"2021-12-27T17:45:25.141Z INFO [monitoring] log/log.go:184 Non-zero metrics in the last 30s {""monitoring"": {""metrics"": {""beat"":{""cgroup"":{""cpuacct"":{""total"":{""ns"":14134194}},""memory"":{""mem"":{""usage"":{""bytes"":90112}}}},""cpu"":{""system"":{""ticks"":60,""time"":{""ms"":10}},""total"":{""ticks"":240,""time"":{""ms"":13},""value"":240},""user"":{""ticks"":180,""time"":{""ms"":3}}},""handles"":{""limit"":{""hard"":4096,""soft"":1024},""open"":13},""info"":{""ephemeral_id"":""ca6fdfa1-29eb-4833-9071-af4bd109691b"",""uptime"":{""ms"":90415},""version"":""7.16.1""},""memstats"":{""gc_next"":21874528,""memory_alloc"":12374336,""memory_total"":64509976,""rss"":125206528},""runtime"":{""goroutines"":40}},""filebeat"":{""harvester"":{""open_files"":0,""running"":0}},""libbeat"":{""config"":{""module"":{""running"":0}},""output"":{""events"":{""active"":0}},""pipeline"":{""clients"":4,""events"":{""active"":0}}},""registrar"":{""states"":{""current"":0}},""system"":{""load"":{""1"":0.07,""15"":0.05,""5"":0.11,""norm"":{""1"":0.035,""15"":0.025,""5"":0.055}}}}}}"
1640627155142,"2021-12-27T17:45:55.141Z INFO [monitoring] log/log.go:184 Non-zero metrics in the last 30s {""monitoring"": {""metrics"": {""beat"":{""cgroup"":{""cpuacct"":{""total"":{""ns"":10355367}},""memory"":{""mem"":{""usage"":{""bytes"":32768}}}},""cpu"":{""system"":{""ticks"":70,""time"":{""ms"":6}},""total"":{""ticks"":260,""time"":{""ms"":10},""value"":260},""user"":{""ticks"":190,""time"":{""ms"":4}}},""handles"":{""limit"":{""hard"":4096,""soft"":1024},""open"":13},""info"":{""ephemeral_id"":""ca6fdfa1-29eb-4833-9071-af4bd109691b"",""uptime"":{""ms"":120416},""version"":""7.16.1""},""memstats"":{""gc_next"":21874528,""memory_alloc"":13478416,""memory_total"":65614056,""rss"":125206528},""runtime"":{""goroutines"":40}},""filebeat"":{""harvester"":{""open_files"":0,""running"":0}},""libbeat"":{""config"":{""module"":{""running"":0}},""output"":{""events"":{""active"":0}},""pipeline"":{""clients"":4,""events"":{""active"":0}}},""registrar"":{""states"":{""current"":0}},""system"":{""load"":{""1"":0.04,""15"":0.05,""5"":0.1,""norm"":{""1"":0.02,""15"":0.025,""5"":0.05}}}}}}"
1640627185142,"2021-12-27T17:46:25.142Z INFO [monitoring] log/log.go:184 Non-zero metrics in the last 30s {""monitoring"": {""metrics"": {""beat"":{""cgroup"":{""cpuacct"":{""total"":{""ns"":12136907}},""memory"":{""mem"":{""usage"":{""bytes"":28672}}}},""cpu"":{""system"":{""ticks"":70,""time"":{""ms"":5}},""total"":{""ticks"":260,""time"":{""ms"":12},""value"":260},""user"":{""ticks"":190,""time"":{""ms"":7}}},""handles"":{""limit"":{""hard"":4096,""soft"":1024},""open"":13},""info"":{""ephemeral_id"":""ca6fdfa1-29eb-4833-9071-af4bd109691b"",""uptime"":{""ms"":150416},""version"":""7.16.1""},""memstats"":{""gc_next"":21874528,""memory_alloc"":14647008,""memory_total"":66782648,""rss"":125206528},""runtime"":{""goroutines"":40}},""filebeat"":{""harvester"":{""open_files"":0,""running"":0}},""libbeat"":{""config"":{""module"":{""running"":0}},""output"":{""events"":{""active"":0}},""pipeline"":{""clients"":4,""events"":{""active"":0}}},""registrar"":{""states"":{""current"":0}},""system"":{""load"":{""1"":0.02,""15"":0.04,""5"":0.08,""norm"":{""1"":0.01,""15"":0.02,""5"":0.04}}}}}}"
1640627215141,"2021-12-27T17:46:55.141Z INFO [monitoring] log/log.go:184 Non-zero metrics in the last 30s {""monitoring"": {""metrics"": {""beat"":{""cgroup"":{""cpuacct"":{""total"":{""ns"":34977429}},""memory"":{""mem"":{""usage"":{""bytes"":-3268608}}}},""cpu"":{""system"":{""ticks"":90,""time"":{""ms"":17}},""total"":{""ticks"":300,""time"":{""ms"":34},""value"":300},""user"":{""ticks"":210,""time"":{""ms"":17}}},""handles"":{""limit"":{""hard"":4096,""soft"":1024},""open"":13},""info"":{""ephemeral_id"":""ca6fdfa1-29eb-4833-9071-af4bd109691b"",""uptime"":{""ms"":180415},""version"":""7.16.1""},""memstats"":{""gc_next"":20245424,""memory_alloc"":10399504,""memory_total"":67522464,""rss"":122077184},""runtime"":{""goroutines"":40}},""filebeat"":{""harvester"":{""open_files"":0,""running"":0}},""libbeat"":{""config"":{""module"":{""running"":0}},""output"":{""events"":{""active"":0}},""pipeline"":{""clients"":4,""events"":{""active"":0}}},""registrar"":{""states"":{""current"":0}},""system"":{""load"":{""1"":0.01,""15"":0.04,""5"":0.08,""norm"":{""1"":0.005,""15"":0.02,""5"":0.04}}}}}}"
1640627245141,"2021-12-27T17:47:25.141Z INFO [monitoring] log/log.go:184 Non-zero metrics in the last 30s {""monitoring"": {""metrics"": {""beat"":{""cgroup"":{""cpuacct"":{""total"":{""ns"":11485105}},""memory"":{""mem"":{""usage"":{""bytes"":-118784}}}},""cpu"":{""system"":{""ticks"":100,""time"":{""ms"":9}},""total"":{""ticks"":310,""time"":{""ms"":12},""value"":310},""user"":{""ticks"":210,""time"":{""ms"":3}}},""handles"":{""limit"":{""hard"":4096,""soft"":1024},""open"":13},""info"":{""ephemeral_id"":""ca6fdfa1-29eb-4833-9071-af4bd109691b"",""uptime"":{""ms"":210415},""version"":""7.16.1""},""memstats"":{""gc_next"":20245424,""memory_alloc"":11554360,""memory_total"":68677320,""rss"":122077184},""runtime"":{""goroutines"":40}},""filebeat"":{""harvester"":{""open_files"":0,""running"":0}},""libbeat"":{""config"":{""module"":{""running"":0}},""output"":{""events"":{""active"":0}},""pipeline"":{""clients"":4,""events"":{""active"":0}}},""registrar"":{""states"":{""current"":0}},""system"":{""load"":{""1"":0.01,""15"":0.04,""5"":0.07,""norm"":{""1"":0.005,""15"":0.02,""5"":0.035}}}}}}"
1640627257140,2021-12-27T17:47:37.140Z INFO [publisher_pipeline_output] pipeline/output.go:143 Connecting to backoff(async(tcp://*logstashurl*))
1640627257220,2021-12-27T17:47:37.220Z INFO [publisher] pipeline/retry.go:219 retryer: send unwait signal to consumer
1640627257220,2021-12-27T17:47:37.220Z INFO [publisher] pipeline/retry.go:223 done
1640627257223,2021-12-27T17:47:37.223Z INFO [publisher_pipeline_output] pipeline/output.go:151 Connection to backoff(async(tcp://*logstashurl*)) established
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