I don't understand. The geoip filter converts IP addresses to lat/lon values. Are you saying that the location field contains "42.100533,-91.443321"? And you're trying to process that with the geoip filter?
I think geo_point type accepts strings with two comma-separated floating point values. Otherwise the mutate filter's split option allows you to split the string into an array with two values. You may have to convert them to float values after the split.
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