Kibana unable to load index in Elasticsearch

I have just installed Kibana, Elastic and Filebeat on my Red Hat 7.7 servers using RPM. Details,

  • Filebeat 7.6.1
  • Elastic 7.6.1
  • Kibana 7.6.1

Filebeat is installed on two nodes and Kibana and Elastic are installed on the same node. Filebeat is able to send data successfully to Elastic and the filebeat index is created successfully,

health status index                            uuid                   pri rep docs.count docs.deleted store.size pri.store.size
green  open   .kibana_task_manager_1           BVpQMGYMQTiPip_V8UZJ-A   1   0          2            0     51.3kb         51.3kb
green  open   .apm-agent-configuration         bOcE0iDSRDuiYFOZ6-SkRg   1   0          0            0       283b           283b
green  open   ilm-history-1-000001             6VatVIl_TieoFXJGdJ6uLA   1   0         18            0     25.3kb         25.3kb
green  open   .kibana_1                        l8UU3ekDSzSEt5zhWIg7-Q   1   0          8            4     14.5kb         14.5kb
yellow open   filebeat-7.6.1-2020.04.02-000001 ND2gVbjvQ2K_36E2On3xqQ   1   1       9698            0      2.1mb          2.1mb

This data is viewable in the logs tab of Kibana but not in the Discover tab. Also these indices are not viewable in Kibana when trying to Create an index Pattern in Kibana. Please help resolve this at the earliest since this is blocking our usage of the ELK stack.

Are you using the built-in security solution? If yes, please check whether you can see the indices when logging in with a super user and check whether your regular user has access to the indices in question if that's the case.

Thanks for the reply. I haven't explicitly enabled any security settings, in either Elastic or Kibana. Nor have I setup User permissions in either of them. Attaching my elastic and kibana configurations for reference. Help is much appreciated.

Kibana Configuration

# Kibana is served by a back end server. This setting specifies the port to use.
#server.port: 5601

# Specifies the address to which the Kibana server will bind. IP addresses and host names are both valid values.
# The default is 'localhost', which usually means remote machines will not be able to connect.
# To allow connections from remote users, set this parameter to a non-loopback address.
#server.host: "localhost"

# Enables you to specify a path to mount Kibana at if you are running behind a proxy.
# Use the `server.rewriteBasePath` setting to tell Kibana if it should remove the basePath
# from requests it receives, and to prevent a deprecation warning at startup.
# This setting cannot end in a slash.
#server.basePath: ""

# Specifies whether Kibana should rewrite requests that are prefixed with
# `server.basePath` or require that they are rewritten by your reverse proxy.
# This setting was effectively always `false` before Kibana 6.3 and will
# default to `true` starting in Kibana 7.0.
#server.rewriteBasePath: false

# The maximum payload size in bytes for incoming server requests.
#server.maxPayloadBytes: 1048576

# The Kibana server's name.  This is used for display purposes.
#server.name: "your-hostname"

# The URLs of the Elasticsearch instances to use for all your queries.
elasticsearch.hosts: ["http://localhost:9200"]

# When this setting's value is true Kibana uses the hostname specified in the server.host
# setting. When the value of this setting is false, Kibana uses the hostname of the host
# that connects to this Kibana instance.
#elasticsearch.preserveHost: true

# Kibana uses an index in Elasticsearch to store saved searches, visualizations and
# dashboards. Kibana creates a new index if the index doesn't already exist.
kibana.index: ".kibana"

# The default application to load.
#kibana.defaultAppId: "home"

# If your Elasticsearch is protected with basic authentication, these settings provide
# the username and password that the Kibana server uses to perform maintenance on the Kibana
# index at startup. Your Kibana users still need to authenticate with Elasticsearch, which
# is proxied through the Kibana server.
#elasticsearch.username: "kibana"
#elasticsearch.password: "pass"

# Enables SSL and paths to the PEM-format SSL certificate and SSL key files, respectively.
# These settings enable SSL for outgoing requests from the Kibana server to the browser.
#server.ssl.enabled: false
#server.ssl.certificate: /path/to/your/server.crt
#server.ssl.key: /path/to/your/server.key

# Optional settings that provide the paths to the PEM-format SSL certificate and key files.
# These files are used to verify the identity of Kibana to Elasticsearch and are required when
# xpack.security.http.ssl.client_authentication in Elasticsearch is set to required.
#elasticsearch.ssl.certificate: /path/to/your/client.crt
#elasticsearch.ssl.key: /path/to/your/client.key

# Optional setting that enables you to specify a path to the PEM file for the certificate
# authority for your Elasticsearch instance.
#elasticsearch.ssl.certificateAuthorities: [ "/path/to/your/CA.pem" ]

# To disregard the validity of SSL certificates, change this setting's value to 'none'.
#elasticsearch.ssl.verificationMode: full

# Time in milliseconds to wait for Elasticsearch to respond to pings. Defaults to the value of
# the elasticsearch.requestTimeout setting.
#elasticsearch.pingTimeout: 1500

# Time in milliseconds to wait for responses from the back end or Elasticsearch. This value
# must be a positive integer.
#elasticsearch.requestTimeout: 30000

# List of Kibana client-side headers to send to Elasticsearch. To send *no* client-side
# headers, set this value to [] (an empty list).
#elasticsearch.requestHeadersWhitelist: [ authorization ]

# Header names and values that are sent to Elasticsearch. Any custom headers cannot be overwritten
# by client-side headers, regardless of the elasticsearch.requestHeadersWhitelist configuration.
#elasticsearch.customHeaders: {}

# Time in milliseconds for Elasticsearch to wait for responses from shards. Set to 0 to disable.
#elasticsearch.shardTimeout: 30000

# Time in milliseconds to wait for Elasticsearch at Kibana startup before retrying.
#elasticsearch.startupTimeout: 5000

# Logs queries sent to Elasticsearch. Requires logging.verbose set to true.
#elasticsearch.logQueries: false

# Specifies the path where Kibana creates the process ID file.
#pid.file: /var/run/kibana.pid

# Enables you specify a file where Kibana stores log output.
logging.dest: /var/log/kibana/kibana.log

# Set the value of this setting to true to suppress all logging output.
#logging.silent: false

# Set the value of this setting to true to suppress all logging output other than error messages.
#logging.quiet: false

# Set the value of this setting to true to log all events, including system usage information
# and all requests.
#logging.verbose: false

# Set the interval in milliseconds to sample system and process performance
# metrics. Minimum is 100ms. Defaults to 5000.
#ops.interval: 5000

# Specifies locale to be used for all localizable strings, dates and number formats.
# Supported languages are the following: English - en , by default , Chinese - zh-CN .
#i18n.locale: "en"

Elastic Configuration

# ======================== Elasticsearch Configuration =========================
#
# NOTE: Elasticsearch comes with reasonable defaults for most settings.
#       Before you set out to tweak and tune the configuration, make sure you
#       understand what are you trying to accomplish and the consequences.
#
# The primary way of configuring a node is via this file. This template lists
# the most important settings you may want to configure for a production cluster.
#
# Please consult the documentation for further information on configuration options:
# https://www.elastic.co/guide/en/elasticsearch/reference/index.html
#
# ---------------------------------- Cluster -----------------------------------
#
# Use a descriptive name for your cluster:
#
cluster.name: elastic-stax-logs
#
# ------------------------------------ Node ------------------------------------
#
# Use a descriptive name for the node:
#
node.name: JENKINS
#
# Add custom attributes to the node:
#
#node.attr.rack: r1
#
# ----------------------------------- Paths ------------------------------------
#
# Path to directory where to store the data (separate multiple locations by comma):
#
path.data: /var/lib/elasticsearch
#
# Path to log files:
#
path.logs: /var/log/elasticsearch
#
# ----------------------------------- Memory -----------------------------------
#
# Lock the memory on startup:
#
#bootstrap.memory_lock: true
#
# Make sure that the heap size is set to about half the memory available
# on the system and that the owner of the process is allowed to use this
# limit.
#
# Elasticsearch performs poorly when the system is swapping the memory.
#
# ---------------------------------- Network -----------------------------------
#
# Set the bind address to a specific IP (IPv4 or IPv6):
#
network.host: 127.0.0.1
#
# Set a custom port for HTTP:
#
http.port: 9200
http.host: 0.0.0.0
#
# For more information, consult the network module documentation.
#
# --------------------------------- Discovery ----------------------------------
#
# Pass an initial list of hosts to perform discovery when this node is started:
# The default list of hosts is ["127.0.0.1", "[::1]"]
#
#discovery.seed_hosts: ["host1", "host2"]
#
# Bootstrap the cluster using an initial set of master-eligible nodes:
#
#cluster.initial_master_nodes: ["node-1", "node-2"]
#
# For more information, consult the discovery and cluster formation module documentation.
#
# ---------------------------------- Gateway -----------------------------------
#
# Block initial recovery after a full cluster restart until N nodes are started:
#
#gateway.recover_after_nodes: 3
#
# For more information, consult the gateway module documentation.
#
# ---------------------------------- Various -----------------------------------
#
# Require explicit names when deleting indices:
#
#action.destructive_requires_name: true

OK, so the kibana, apm and ilm related indices are not expected to show up in the index pattern management as they are system indices.

But the filebeat index should definitely show up. You probably already did this, but just to make sure -

Is it showing up for you when you are entering the following in the search (filebeat*)?

Also, it seems like your filebeat is configured to create indices with one replica which can't be satisfied, probably because you are running just a single Elasticsearch node (this is why it shows up as yellow). You can fix this in the filebeat config by defining the template settings (specifically the number_of_replicas): https://www.elastic.co/guide/en/beats/filebeat/master/configuration-template.html

Have added the number_of_replicas setting but the index status is still yellow.


setup.template.settings:
  index.number_of_shards: 1
  index.number_of_replicas: 1
  #index.codec: best_compression
  #_source.enabled: false

When I am trying to create the index pattern kibana is unable to find the indices. See the screenshot below. I have tried to delete the elastic data and reinstall both Kibana and Elastic with the same result.

On an unrelated note, I am unable to get filebeat to perform any logging. Let me know if there is anything that jumps out at you. Help is much appreciated.

###################### Filebeat Configuration Example #########################

# This file is an example configuration file highlighting only the most common
# options. The filebeat.reference.yml file from the same directory contains all the
# supported options with more comments. You can use it as a reference.
#
# You can find the full configuration reference here:
# https://www.elastic.co/guide/en/beats/filebeat/index.html

# For more available modules and options, please see the filebeat.reference.yml sample
# configuration file.

#=========================== Filebeat inputs =============================

filebeat.inputs:

# Each - is an input. Most options can be set at the input level, so
# you can use different inputs for various configurations.
# Below are the input specific configurations.

- type: log

  # Change to true to enable this input configuration.
  enabled: true

  # Paths that should be crawled and fetched. Glob based paths.
  paths:
    - /var/log/file-processor/file-processor-service.log
    - /var/log/file-processor/file-processor-service-hikari.log
    - /var/log/api-gateway/api-gateway-service.log
    - /var/log/invoice-reco/invoice-reco-service.log
    - /var/log/invoice-reco/invoice-reco-service-hikari.log
    - /var/log/gst-client/gst-client-service.log
    - /var/log/report/report-service.log
    - /var/log/user/user-service.log
    - /var/log/user/user-service-hikari.log
    - /var/log/billing/billing-service.log
    - /var/log/ftp/ftp-service.log
    - /var/log/saml2-sso/saml2-sso-service.log
    #- c:\programdata\elasticsearch\logs\*

  # Exclude lines. A list of regular expressions to match. It drops the lines that are
  # matching any regular expression from the list.
  #exclude_lines: ['^DBG']

  # Include lines. A list of regular expressions to match. It exports the lines that are
  # matching any regular expression from the list.
  #include_lines: ['^ERR', '^WARN']

  # Exclude files. A list of regular expressions to match. Filebeat drops the files that
  # are matching any regular expression from the list. By default, no files are dropped.
  #exclude_files: ['.gz$']

  # Optional additional fields. These fields can be freely picked
  # to add additional information to the crawled log files for filtering
  #fields:
  #  level: debug
  #  review: 1

  ### Multiline options

  # Multiline can be used for log messages spanning multiple lines. This is common
  # for Java Stack Traces or C-Line Continuation

  # The regexp Pattern that has to be matched. The example pattern matches all lines starting with [
  multiline.pattern: ^[0-9]{4}-[0-9]{2}-[0-9]{2}

  # Defines if the pattern set under pattern should be negated or not. Default is false.
  multiline.negate: true

  # Match can be set to "after" or "before". It is used to define if lines should be append to a pattern
  # that was (not) matched before or after or as long as a pattern is not matched based on negate.
  # Note: After is the equivalent to previous and before is the equivalent to to next in Logstash
  multiline.match: after


#============================= Filebeat modules ===============================

filebeat.config.modules:
  # Glob pattern for configuration loading
  path: ${path.config}/modules.d/*.yml

  # Set to true to enable config reloading
  reload.enabled: false

  # Period on which files under path should be checked for changes
  #reload.period: 10s

#==================== Elasticsearch template setting ==========================

setup.template.settings:
  index.number_of_shards: 1
  index.number_of_replicas: 1
  #index.codec: best_compression
  #_source.enabled: false

#================================ General =====================================

# The name of the shipper that publishes the network data. It can be used to group
# all the transactions sent by a single shipper in the web interface.
#name:

# The tags of the shipper are included in their own field with each
# transaction published.
#tags: ["service-X", "web-tier"]

# Optional fields that you can specify to add additional information to the
# output.
#fields:
#  env: staging


#============================== Dashboards =====================================
# These settings control loading the sample dashboards to the Kibana index. Loading
# the dashboards is disabled by default and can be enabled either by setting the
# options here or by using the `setup` command.
#setup.dashboards.enabled: false

# The URL from where to download the dashboards archive. By default this URL
# has a value which is computed based on the Beat name and version. For released
# versions, this URL points to the dashboard archive on the artifacts.elastic.co
# website.
#setup.dashboards.url:

#============================== Kibana =====================================

# Starting with Beats version 6.0.0, the dashboards are loaded via the Kibana API.
# This requires a Kibana endpoint configuration.
setup.kibana:

  # Kibana Host
  # Scheme and port can be left out and will be set to the default (http and 5601)
  # In case you specify and additional path, the scheme is required: http://localhost:5601/path
  # IPv6 addresses should always be defined as: https://[2001:db8::1]:5601
  host: "http://JENKINS:5601"

  # Kibana Space ID
  # ID of the Kibana Space into which the dashboards should be loaded. By default,
  # the Default Space will be used.
  #space.id:

#============================= Elastic Cloud ==================================

# These settings simplify using Filebeat with the Elastic Cloud (https://cloud.elastic.co/).

# The cloud.id setting overwrites the `output.elasticsearch.hosts` and
# `setup.kibana.host` options.
# You can find the `cloud.id` in the Elastic Cloud web UI.
#cloud.id:

# The cloud.auth setting overwrites the `output.elasticsearch.username` and
# `output.elasticsearch.password` settings. The format is `<user>:<pass>`.
#cloud.auth:

#================================ Outputs =====================================

# Configure what output to use when sending the data collected by the beat.

#-------------------------- Elasticsearch output ------------------------------
output.elasticsearch:
  # Array of hosts to connect to.
  hosts: ["JENKINS:9200"]
  pipeline: "application_log_pipeline1"

  # Protocol - either `http` (default) or `https`.
  protocol: "http"

  # Authentication credentials - either API key or username/password.
  #api_key: "id:api_key"
  #username: "elastic"
  #password: "changeme"

#----------------------------- Logstash output --------------------------------
#output.logstash:
  # The Logstash hosts
  #hosts: ["localhost:5044"]

  # Optional SSL. By default is off.
  # List of root certificates for HTTPS server verifications
  #ssl.certificate_authorities: ["/etc/pki/root/ca.pem"]

  # Certificate for SSL client authentication
  #ssl.certificate: "/etc/pki/client/cert.pem"

  # Client Certificate Key
  #ssl.key: "/etc/pki/client/cert.key"

#================================ Processors =====================================

# Configure processors to enhance or manipulate events generated by the beat.

processors:
  - add_host_metadata: ~
  - add_cloud_metadata: ~
  - add_docker_metadata: ~
  - add_kubernetes_metadata: ~

#================================ Logging =====================================

# Sets log level. The default log level is info.
# Available log levels are: error, warning, info, debug
#logging.level: debug
logging.level: debug
logging.to_files: true
logging.files:
  path: /var/log/filebeat
  name: filebeat
  keepfiles: 7
  permissions: 0644

# At debug level, you can selectively enable logging only for some components.
# To enable all selectors use ["*"]. Examples of other selectors are "beat",
# "publish", "service".
#logging.selectors: ["*"]

#============================== X-Pack Monitoring ===============================
# filebeat can export internal metrics to a central Elasticsearch monitoring
# cluster.  This requires xpack monitoring to be enabled in Elasticsearch.  The
# reporting is disabled by default.

# Set to true to enable the monitoring reporter.
#monitoring.enabled: false

# Sets the UUID of the Elasticsearch cluster under which monitoring data for this
# Filebeat instance will appear in the Stack Monitoring UI. If output.elasticsearch
# is enabled, the UUID is derived from the Elasticsearch cluster referenced by output.elasticsearch.
#monitoring.cluster_uuid:

# Uncomment to send the metrics to Elasticsearch. Most settings from the
# Elasticsearch output are accepted here as well.
# Note that the settings should point to your Elasticsearch *monitoring* cluster.
# Any setting that is not set is automatically inherited from the Elasticsearch
# output configuration, so if you have the Elasticsearch output configured such
# that it is pointing to your Elasticsearch monitoring cluster, you can simply
# uncomment the following line.
#monitoring.elasticsearch:

#================================= Migration ==================================

# This allows to enable 6.7 migration aliases
#migration.6_to_7.enabled: true

Interestingly the logs from Filebeat are viewable in the Logs section of Kibana but not in the Discover section where I'd like to see them.

That’s really strange, seems like a bug in index pattern management. If you search for the index, are there any errors in the browser console or failed requests in the network tab?

No error in the Network tab and these are the errors in the Console.

Hey, help is much appreciated since I need to finish this PoC for a production environment.

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