This is my Logstash log so that you can see that it is obviously initializing the two pipelines correctly:
[2019-01-04T12:46:26,256][INFO ][logstash.runner ] Starting Logstash {"logstash.version"=>"6.4.0"}
[2019-01-04T12:46:31,249][INFO ][logstash.pipeline ] Starting pipeline {:pipeline_id=>"logtailing", "pipeline.workers"=>1, "pipeline.batch.size"=>125, "pipeline.batch.delay"=>50}
[2019-01-04T12:46:32,138][INFO ][logstash.outputs.elasticsearch] Elasticsearch pool URLs updated {:changes=>{:removed=>[], :added=>[http://****:9200/]}}
[2019-01-04T12:46:32,151][INFO ][logstash.outputs.elasticsearch] Running health check to see if an Elasticsearch connection is working {:healthcheck_url=>http://****:9200/, :path=>"/"}
[2019-01-04T12:46:32,644][INFO ][logstash.pipeline ] Starting pipeline {:pipeline_id=>"releaserexceptions", "pipeline.workers"=>1, "pipeline.batch.size"=>125, "pipeline.batch.delay"=>50}
[2019-01-04T12:46:32,670][INFO ][logstash.outputs.elasticsearch] Elasticsearch pool URLs updated {:changes=>{:removed=>[], :added=>[http://****:9200/]}}
[2019-01-04T12:46:32,672][INFO ][logstash.outputs.elasticsearch] Running health check to see if an Elasticsearch connection is working {:healthcheck_url=>http://****:9200/, :path=>"/"}
[2019-01-04T12:46:32,741][WARN ][logstash.outputs.elasticsearch] Restored connection to ES instance {:url=>"http://****:9200/"}
[2019-01-04T12:46:32,806][INFO ][logstash.outputs.elasticsearch] ES Output version determined {:es_version=>6}
[2019-01-04T12:46:32,811][WARN ][logstash.outputs.elasticsearch] Detected a 6.x and above cluster: the `type` event field won't be used to determine the document _type {:es_version=>6}
[2019-01-04T12:46:32,842][INFO ][logstash.outputs.elasticsearch] New Elasticsearch output {:class=>"LogStash::Outputs::ElasticSearch", :hosts=>["http://****:9200"]}
[2019-01-04T12:46:32,869][INFO ][logstash.outputs.elasticsearch] Using mapping template from {:path=>nil}
[2019-01-04T12:46:32,900][INFO ][logstash.outputs.elasticsearch] Attempting to install template {:manage_template=>{"template"=>"logstash-*", "version"=>60001, "settings"=>{"index.refresh_interval"=>"5s"}, "mappings"=>{"_default_"=>{"dynamic_templates"=>[{"message_field"=>{"path_match"=>"message", "match_mapping_type"=>"string", "mapping"=>{"type"=>"text", "norms"=>false}}}, {"string_fields"=>{"match"=>"*", "match_mapping_type"=>"string", "mapping"=>{"type"=>"text", "norms"=>false, "fields"=>{"keyword"=>{"type"=>"keyword", "ignore_above"=>256}}}}}], "properties"=>{"@timestamp"=>{"type"=>"date"}, "@version"=>{"type"=>"keyword"}, "geoip"=>{"dynamic"=>true, "properties"=>{"ip"=>{"type"=>"ip"}, "location"=>{"type"=>"geo_point"}, "latitude"=>{"type"=>"half_float"}, "longitude"=>{"type"=>"half_float"}}}}}}}}
[2019-01-04T12:46:33,461][WARN ][logstash.outputs.elasticsearch] Restored connection to ES instance {:url=>"http://****:9200/"}
[2019-01-04T12:46:33,466][INFO ][logstash.outputs.elasticsearch] ES Output version determined {:es_version=>6}
[2019-01-04T12:46:33,466][WARN ][logstash.outputs.elasticsearch] Detected a 6.x and above cluster: the `type` event field won't be used to determine the document _type {:es_version=>6}
[2019-01-04T12:46:33,468][INFO ][logstash.outputs.elasticsearch] New Elasticsearch output {:class=>"LogStash::Outputs::ElasticSearch", :hosts=>["http://****:9200"]}
[2019-01-04T12:46:33,474][INFO ][logstash.outputs.elasticsearch] Using mapping template from {:path=>nil}
[2019-01-04T12:46:33,499][INFO ][logstash.outputs.elasticsearch] Attempting to install template {:manage_template=>{"template"=>"logstash-*", "version"=>60001, "settings"=>{"index.refresh_interval"=>"5s"}, "mappings"=>{"_default_"=>{"dynamic_templates"=>[{"message_field"=>{"path_match"=>"message", "match_mapping_type"=>"string", "mapping"=>{"type"=>"text", "norms"=>false}}}, {"string_fields"=>{"match"=>"*", "match_mapping_type"=>"string", "mapping"=>{"type"=>"text", "norms"=>false, "fields"=>{"keyword"=>{"type"=>"keyword", "ignore_above"=>256}}}}}], "properties"=>{"@timestamp"=>{"type"=>"date"}, "@version"=>{"type"=>"keyword"}, "geoip"=>{"dynamic"=>true, "properties"=>{"ip"=>{"type"=>"ip"}, "location"=>{"type"=>"geo_point"}, "latitude"=>{"type"=>"half_float"}, "longitude"=>{"type"=>"half_float"}}}}}}}}
[2019-01-04T12:46:33,813][INFO ][logstash.inputs.beats ] Beats inputs: Starting input listener {:address=>"0.0.0.0:5043"}
[2019-01-04T12:46:33,831][INFO ][logstash.inputs.beats ] Beats inputs: Starting input listener {:address=>"0.0.0.0:5044"}
[2019-01-04T12:46:33,903][INFO ][logstash.pipeline ] Pipeline started successfully {:pipeline_id=>"logtailing", :thread=>"#<Thread:0x132b2cfb run>"}
[2019-01-04T12:46:33,903][INFO ][logstash.pipeline ] Pipeline started successfully {:pipeline_id=>"releaserexceptions", :thread=>"#<Thread:0xaf8b522 run>"}
[2019-01-04T12:46:33,998][INFO ][logstash.agent ] Pipelines running {:count=>2, :running_pipelines=>[:logtailing, :releaserexceptions], :non_running_pipelines=>[]}
[2019-01-04T12:46:34,013][INFO ][org.logstash.beats.Server] Starting server on port: 5043
[2019-01-04T12:46:34,013][INFO ][org.logstash.beats.Server] Starting server on port: 5044
[2019-01-04T12:46:34,453][INFO ][logstash.agent ] Successfully started Logstash API endpoint {:port=>9600}