Set individual Kibana options

Is there a way to only set specific Kibana options instead of replacing the whole blob? Why doesn't kibana.yml allow for defaults override so that when a new .kibana index is created, it can be populated from there instead of having to make REST API calls?

I'm sorry, but could you explain this a little more?
the kibana.yml file allows you to change any settings you want, so this is what I don't understand.

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