Unable to start ElasticSearch after install on CENTOS 7

ian-hosting · August 4, 2020, 2:41pm

Hi

Went through the steps to install the latest ElasticSearch via rpm and all seemed to go well but when I try to start it, there is an error

First time attempting to install this so am a bit lost as to where to look for what is causing the problem and all help gratefully received

Thanks
Ian

# systemctl -l status elasticsearch
● elasticsearch.service - Elasticsearch
   Loaded: loaded (/usr/lib/systemd/system/elasticsearch.service; enabled; vendor preset: disabled)
   Active: failed (Result: exit-code) since Tue 2020-08-04 12:00:32 BST; 3h 35min ago
     Docs: https://www.elastic.co
  Process: 32721 ExecStart=/usr/share/elasticsearch/bin/systemd-entrypoint -p ${PID_DIR}/elasticsearch.pid --quiet (code=exited, status=1/FAILURE)
 Main PID: 32721 (code=exited, status=1/FAILURE)

Aug 04 12:00:31 server.domain.co.uk systemd-entrypoint[32721]: at org.elasticsearch.bootstrap.Elasticsearch.execute(Elasticsearch.java:161)
Aug 04 12:00:31 server.domain.co.uk systemd-entrypoint[32721]: at org.elasticsearch.cli.EnvironmentAwareCommand.execute(EnvironmentAwareCommand.java:86)
Aug 04 12:00:31 server.domain.co.uk systemd-entrypoint[32721]: at org.elasticsearch.cli.Command.mainWithoutErrorHandling(Command.java:127)
Aug 04 12:00:31 server.domain.co.uk systemd-entrypoint[32721]: at org.elasticsearch.cli.Command.main(Command.java:90)
Aug 04 12:00:31 server.domain.co.uk systemd-entrypoint[32721]: at org.elasticsearch.bootstrap.Elasticsearch.main(Elasticsearch.java:126)
Aug 04 12:00:31 server.domain.co.uk systemd-entrypoint[32721]: at org.elasticsearch.bootstrap.Elasticsearch.main(Elasticsearch.java:92)
Aug 04 12:00:32 server.domain.co.uk systemd[1]: elasticsearch.service: main process exited, code=exited, status=1/FAILURE
Aug 04 12:00:32 server.domain.co.uk systemd[1]: Failed to start Elasticsearch.
Aug 04 12:00:32 server.domain.co.uk systemd[1]: Unit elasticsearch.service entered failed state.
Aug 04 12:00:32 server.domain.co.uk systemd[1]: elasticsearch.service failed.

ian-hosting · August 4, 2020, 3:50pm

As a test, I followed the exact same procedure on another server (that should be configured identically) and it worked perfectly.

Relevant information from journalctr

Any other pointers please ?

Aug 04 16:45:09 server.domain.co.uk systemd-entrypoint[17950]: at org.elasticsearch.systemd.Libsystemd.lambda$static$0(Libsystemd.java:34)
Aug 04 16:45:09 server.domain.co.uk systemd-entrypoint[17950]: at org.elasticsearch.systemd.Libsystemd.<clinit>(Libsystemd.java:33)
Aug 04 16:45:09 server.domain.co.uk systemd-entrypoint[17950]: at org.elasticsearch.systemd.SystemdPlugin.sd_notify(SystemdPlugin.java:126)
Aug 04 16:45:09 server.domain.co.uk systemd-entrypoint[17950]: at org.elasticsearch.systemd.SystemdPlugin.onNodeStarted(SystemdPlugin.java:137)
Aug 04 16:45:09 server.domain.co.uk systemd-entrypoint[17950]: at org.elasticsearch.node.Node.start(Node.java:823)
Aug 04 16:45:09 server.domain.co.uk systemd-entrypoint[17950]: at org.elasticsearch.bootstrap.Bootstrap.start(Bootstrap.java:317)
Aug 04 16:45:09 server.domain.co.uk systemd-entrypoint[17950]: at org.elasticsearch.bootstrap.Bootstrap.init(Bootstrap.java:402)
Aug 04 16:45:09 server.domain.co.uk systemd-entrypoint[17950]: at org.elasticsearch.bootstrap.Elasticsearch.init(Elasticsearch.java:170)
Aug 04 16:45:09 server.domain.co.uk systemd-entrypoint[17950]: at org.elasticsearch.bootstrap.Elasticsearch.execute(Elasticsearch.java:161)
Aug 04 16:45:09 server.domain.co.uk systemd-entrypoint[17950]: at org.elasticsearch.cli.EnvironmentAwareCommand.execute(EnvironmentAwareCommand.java:86)
Aug 04 16:45:09 server.domain.co.uk systemd-entrypoint[17950]: at org.elasticsearch.cli.Command.mainWithoutErrorHandling(Command.java:127)
Aug 04 16:45:09 server.domain.co.uk systemd-entrypoint[17950]: at org.elasticsearch.cli.Command.main(Command.java:90)
Aug 04 16:45:09 server.domain.co.uk systemd-entrypoint[17950]: at org.elasticsearch.bootstrap.Elasticsearch.main(Elasticsearch.java:126)
Aug 04 16:45:09 server.domain.co.uk systemd-entrypoint[17950]: at org.elasticsearch.bootstrap.Elasticsearch.main(Elasticsearch.java:92)
Aug 04 16:45:10 server.domain.co.uk systemd[1]: elasticsearch.service: main process exited, code=exited, status=1/FAILURE
Aug 04 16:45:10 server.domain.co.uk systemd[1]: Unit elasticsearch.service entered failed state.
Aug 04 16:45:10 server.domain.co.uk systemd[1]: elasticsearch.service failed

Steve_Mushero · August 5, 2020, 4:51am

No idea; need to find more logs of some type or find way to start manually, etc. as must be some core issue wrong with JVM or disk/network, etc. Kinda strange, though usually good at showing errors.

Steve_Mushero · August 5, 2020, 4:52am

Not SELinux? Have disk space, etc.?

ian-hosting · August 5, 2020, 5:50am

Hi Steve

Thanks for your replies - SELinux is disabled and plenty of disk space.

Happy to provide extracts from any other logs - are there any you would recommend ?

Thanks
Ian

Steve_Mushero · August 5, 2020, 7:44am

Not really, all I can think of are the base elasticsearch logs - I guess to figure out if it's really starting at all, or some JVM issues prevent that - something has to be different, maybe Java version or Java on one VM but not other (ES V7 has its own JVM but maybe it's interfered with or HOME set wrong, etc.)

Need to find the STDERR logs or output, see below.

But looking at your logs, it's failing in bootstrap which checks some things like host, IP, config, shared RAM, etc. so must be failing that, just no logs.

Looking at the code for the lines it mentions, in latest version, it can't seem to create / setup the process, or can't daemonize:

org.elasticsearch.bootstrap.Elasticsearch.execute(Elasticsearch.java:161)

init(daemonize, pidFile, quiet, env);

But if that fails, should show an error message from this exception which it must be hitting and then dying;
throw new UserException(ExitCodes.CONFIG, e.getMessage());

The real init code is here and complex, but stderr should show fatal startup errors, and can fail for many reasons so need to find that stderr - even if you need to start manually on command line; should be easy.

github.com

elastic/elasticsearch/blob/c78b43277e0f7c47d19f7863d365b205c3e164a6/server/src/main/java/org/elasticsearch/bootstrap/Bootstrap.java#L334


        LogManager.getLogger(Bootstrap.class).warn("Thread got interrupted while waiting for the node to shutdown.");
        Thread.currentThread().interrupt();
    } finally {
        INSTANCE.keepAliveLatch.countDown();
    }
}

/**
 * This method is invoked by {@link Elasticsearch#main(String[])} to startup elasticsearch.
 */
static void init(
        final boolean foreground,
        final Path pidFile,
        final boolean quiet,
        final Environment initialEnv) throws BootstrapException, NodeValidationException, UserException {
    // force the class initializer for BootstrapInfo to run before
    // the security manager is installed
    BootstrapInfo.init();

    INSTANCE = new Bootstrap();

ian-hosting · August 5, 2020, 9:33am

The installed versions of Java are exactly the same across both servers so doesnt look like that.

Can you please explain the procedure ?

The only thing I have found from any of the standard logs is the following extract from elasticsearch.log

[2020-08-04T16:45:09,690][ERROR][o.e.b.ElasticsearchUncaughtExceptionHandler] [server.domain.co.uk] fatal error in thread [main], exiting
java.lang.NoClassDefFoundError: Could not initialize class com.sun.jna.Native
        at org.elasticsearch.systemd.Libsystemd.lambda$static$0(Libsystemd.java:34) ~[?:?]
        at java.security.AccessController.doPrivileged(AccessController.java:312) ~[?:?]
        at org.elasticsearch.systemd.Libsystemd.<clinit>(Libsystemd.java:33) ~[?:?]
        at org.elasticsearch.systemd.SystemdPlugin.sd_notify(SystemdPlugin.java:126) ~[?:?]
        at org.elasticsearch.systemd.SystemdPlugin.onNodeStarted(SystemdPlugin.java:137) ~[?:?]
        at java.util.ArrayList.forEach(ArrayList.java:1510) ~[?:?]
        at org.elasticsearch.node.Node.start(Node.java:823) ~[elasticsearch-7.8.1.jar:7.8.1]
        at org.elasticsearch.bootstrap.Bootstrap.start(Bootstrap.java:317) ~[elasticsearch-7.8.1.jar:7.8.1]
        at org.elasticsearch.bootstrap.Bootstrap.init(Bootstrap.java:402) ~[elasticsearch-7.8.1.jar:7.8.1]
        at org.elasticsearch.bootstrap.Elasticsearch.init(Elasticsearch.java:170) ~[elasticsearch-7.8.1.jar:7.8.1]
        at org.elasticsearch.bootstrap.Elasticsearch.execute(Elasticsearch.java:161) ~[elasticsearch-7.8.1.jar:7.8.1]
        at org.elasticsearch.cli.EnvironmentAwareCommand.execute(EnvironmentAwareCommand.java:86) ~[elasticsearch-7.8.1.jar:7.8.1]
        at org.elasticsearch.cli.Command.mainWithoutErrorHandling(Command.java:127) ~[elasticsearch-cli-7.8.1.jar:7.8.1]
        at org.elasticsearch.cli.Command.main(Command.java:90) ~[elasticsearch-cli-7.8.1.jar:7.8.1]
        at org.elasticsearch.bootstrap.Elasticsearch.main(Elasticsearch.java:126) ~[elasticsearch-7.8.1.jar:7.8.1]
        at org.elasticsearch.bootstrap.Elasticsearch.main(Elasticsearch.java:92) ~[elasticsearch-7.8.1.jar:7.8.1]

d.silwon · August 5, 2020, 10:33am

Can you show us the tmp directory from file /etc/elasticsearch/jvm.options and section "## JVM temporary directory"?

ian-hosting · August 5, 2020, 11:29am

Thanks for your input !

## JVM temporary directory
-Djava.io.tmpdir=${ES_TMPDIR}

Same for both servers

Are you asking for something different here - if so I dont understand

d.silwon · August 5, 2020, 11:42am

I suppose that your /tmp is noexec mode. Check it like this:
cat /etc/fstab |grep tmp

results on my michine is:
/dev/mapper/rhel-tmp /tmp xfs defaults,nodev,noexec,nosuid 0 0

If there is noexec then you should create some other tmp directory for elasticsearch service. For exmaple:
mkdir -p /home/elasticsearch/tmp
chown -R elasticsearch.elasticsearch /home/elasticsearch/

and change configuration:

vi /etc/elasticsearch/jvm.options

## JVM temporary directory
# -Djava.io.tmpdir=${ES_TMPDIR}
-Djava.io.tmpdir=/home/elasticsearch/tmp

ian-hosting · August 5, 2020, 12:39pm

The result was actually

# cat /etc/fstab |grep tmp
/usr/tmpDSK             /tmp                    ext3    defaults,noauto        0 0

I went ahead and created a separate tmp directory as you suggested and that now works perfectly !

Many thanks to both of you for your help !

d.silwon · August 5, 2020, 12:41pm

I had the same problem on the beginning on my journey with Elasticsearch. Your welcome

Steve_Mushero · August 6, 2020, 5:31am

Wow, would NEVER have guessed that in a zillion years, and we used to set NOEXEC on /tmp as routine best practice - wonder how it got set on one of his servers but not another.

Really need better logging or at least some kind of bootstrap check for this; insidious.

BUT his defaults,noauto should not include NOEXEC. Man page says: rw, suid, dev, exec, auto, nouser, and async

So I wonder if there is another issue that just using a different directory fixed.

Also I thought CentOS 7 was already ext4; no, it's xfs - so wondering how this /tmp was created as ext3 - this suggests an unusual setup / config process.

d.silwon · August 6, 2020, 6:27am

@Steve_Mushero

We discovered this problem during installation ELK on RHEL7.8 with xfs. During installation we had the same problem with services elasticsearch and logstash.

You are right that there should be more information in the log.

system · September 3, 2020, 6:27am

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Unable to start ElasticSearch after install on CENTOS 7

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