ES 2.4.0 shard initialization taking more time

Hello Experts,

Elasticsearch version: 2.4.0
Plugins installed: [ KOPF, AWS-cloud . s3cmd]
JVM version: 1.8
OS version: Ubuntu

New stage environment have 3 indexes with total size around 600 MB. All node restarted after modification in yml file (added path.repo). Now the problem is after 12 hr cluster health is RED and shard still in initialization state.

Cluster - 1 Master, 2 Master-data, 2 data
All master-data and data node and 64GB RAM and 1.29 TB space . Master node have 32 GB and 660 GB space.
Heap - not more than half of total available memory.

Yml config - all default except below

cluster.name: myname
node.name: prodnode1
node.master: true
node.data: true
path.data: /data/elasticsearch
path.logs: /var/log/elasticsearch
path.repo: /data/datas3/elastic-search-backup
bootstrap.memory_lock: true
network.host: hostIP
discovery.zen.ping.unicast.hosts: ["master-only", "master-data", "master-data"]
discovery.zen.minimum_master_nodes: 2

_recovery - returns blank response
_tasks - many response like below

CXveFzvHS-GMv-h-uf4RVA:2083" : {
"node" : "CXveFzvHS-GMv-h-uf4RVA",
"id" : 2083,
"type" : "netty",
"action" : "internal:discovery/zen/publish",
"start_time_in_millis" : 1488870873680,
"running_time_in_nanos" : 40744147056568
}

Any help appreciated. Thanks in advance

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