What type of disk/storage do you have? Both indexing and querying in Elasticsearch can be quite I/O intensive so disk performance is often the bottleneck. Have you looked at disk I/O and await, e.g. using iostat? If so, what does this look like?
EPS is a bad indicator of performance on its own as the amount of work that need to be performed per document depend on the size, complexity and mappings. What type of data do you have? Are you using parent-child and/or nested documents?
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