I have different industrial sites mapped on kibana but sites which are really closer to each other are clustered together and shown as a single point(circle). Is there a way to keep them separate?
You are able to do that with the Maps-app, by bringing in that data as individual documents instead of as a grid aggregation.
See this section in the getting-started guide, https://www.elastic.co/guide/en/kibana/current/maps-add-elasticsearch-layer.html#_add_a_vector_layer_from_the_document_source
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