How do you pass custom environment variable on Amazon Elastic Beanstalk (AWS EBS)?

The Amazon Elastic Beanstalk blurb says:

Elastic Beanstalk lets you "open the hood" and retain full control ... even pass environment variables through the Elastic Beanstalk console.

How to pass other environment variables besides the one in the Elastic Beanstalk configuration?

This is not related to elastic products I'm afraid.

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