Kibana infrastructure UI does not show metrics

I have a setup of Beats->Logstash->Kafka<-Logstash->Elasticsearch

The Infrastructure UI lists a bunch of hosts but when I click trough to "View metrics" I don't see any data. I am able to see the data if I write directly to Elasticsearch from metricbeat though.

I am trying to figure out what are the filters used by the host page to draw the visualizations.
The index pattern for the direct writes and writes through the pipeline is the same.
The pipeline adds a couple of additional fields to indicate the environment of the node.
Other than that the event is un altered.
I found a similar issue in the below question but this doesn't talk about the pipeline.

Which version of the stack are you using?

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