Multiple Databases and Indexes Logstash

I am using Logstash to sync 4 tables from Mysql to Elasticsearch. My problem is how to scale this to 200 hundred customers. Each customer is in a different database schema and possibly other server too. Every customer should be in a different index on Elastic. What would be the best approach? Should I run logstash in every server and sync all databases from it with the four pipelines getting the results from multiple jdbc inputs and multiple indexes outputs? Or should I configure it with docker and kubernetes so each docker instance handle one input and output?

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