Thanks for your quick response Jason.
I have gone through some more logs, please see if these can make sense,
[2018-02-21T18:46:35,853][WARN ][o.e.b.JNANatives ] Unable to lock JVM Memory: error=12, reason=Cannot allocate memory
[2018-02-21T18:46:35,855][WARN ][o.e.b.JNANatives ] This can result in part of the JVM being swapped out.
[2018-02-21T18:46:35,855][WARN ][o.e.b.JNANatives ] Increase RLIMIT_MEMLOCK, soft limit: 65536, hard limit: 65536
[2018-02-21T18:46:35,856][WARN ][o.e.b.JNANatives ] These can be adjusted by modifying /etc/security/limits.conf, for example:
# allow user 'elasticsearch' mlockall
elasticsearch soft memlock unlimited
elasticsearch hard memlock unlimited
[2018-02-21T18:46:35,856][WARN ][o.e.b.JNANatives ] If you are logged in interactively, you will have to re-login for the new limits to take effect.
[2018-02-21T18:46:35,927][INFO ][o.e.n.Node ] [mynode] initializing ...
[2018-02-21T18:46:35,997][INFO ][o.e.e.NodeEnvironment ] [mynode] using [1] data paths, mounts [[/data (/dev/mapper/xxxxx)]], net usable_space [499.6gb], net total_space [499.7gb], spins? [possibly], types [xfs]
[2018-02-21T18:46:35,997][INFO ][o.e.e.NodeEnvironment ] [mynode] heap size [1.9gb], compressed ordinary object pointers [true]
[2018-02-21T18:46:35,998][INFO ][o.e.n.Node ] [mynode] node name [mynode], node ID [xvye9atOTUSeEyigdrfg]
[2018-02-21T18:46:35,999][INFO ][o.e.n.Node ] [mynode] version[5.6.7], pid[23561], build[4669214/2018-01-25T21:14:50.776Z], OS[Linux/3.10.0-693.11.1.el7.x86_64/amd64], JVM[Oracle Corporation/Java HotSpot(TM) 64-Bit Server VM/1.8.0_161/25.161-b12]
@
[2018-02-21T18:46:35,999][INFO ][o.e.n.Node ] [mynode] JVM arguments [-Xms2g, -Xmx2g, -XX:+UseConcMarkSweepGC, -XX:CMSInitiatingOccupancyFraction=75, -XX:+UseCMSInitiatingOccupancyOnly, -XX:+AlwaysPreTouch, -Xss1m, -Djava.awt.headless=true, -Dfile.encoding=UTF-8, -Djna.nosys=true, -Djdk.io.permissionsUseCanonicalPath=true, -Dio.netty.noUnsafe=true, -Dio.netty.noKeySetOptimization=true, -Dio.netty.recycler.maxCapacityPerThread=0, -Dlog4j.shutdownHookEnabled=false, -Dlog4j2.disable.jmx=true, -Dlog4j.skipJansi=true, -XX:+HeapDumpOnOutOfMemoryError, -Des.path.home=/usr/share/elasticsearch]
[2018-02-21T18:46:36,636][INFO ][o.e.p.PluginsService ] [mynode] loaded module [aggs-matrix-stats]
[2018-02-21T18:46:36,636][INFO ][o.e.p.PluginsService ] [mynode] loaded module [ingest-common]
[2018-02-21T18:46:36,636][INFO ][o.e.p.PluginsService ] [mynode] loaded module [lang-expression]
[2018-02-21T18:46:36,636][INFO ][o.e.p.PluginsService ] [mynode] loaded module [lang-groovy]