Current status. Reading through this is seems like the inputs and outputs are working.
C:\logstash-6.5.0\bin>logstash.bat -f, --path.config C:\logstash-6.5.0\config\logstash.conf
Sending Logstash logs to C:/logstash-6.5.0/logs which is now configured via log4j2.properties
[2018-11-29T10:55:12,355][WARN ][logstash.config.source.multilocal] Ignoring the 'pipelines.yml' file because modules or command line options are specified
[2018-11-29T10:55:12,398][INFO ][logstash.runner ] Starting Logstash {"logstash.version"=>"6.5.0"}
[2018-11-29T10:55:17,028][WARN ][logstash.outputs.elasticsearch] You are using a deprecated config setting "document_type" set in elasticsearch. Deprecated settings will continue to work, but are scheduled for removal from logstash in the future. Document types are being deprecated in Elasticsearch 6.0, and removed entirely in 7.0. You should avoid this feature If you have any questions about this, please visit the #logstash channel on freenode irc. {:name=>"document_type", :plugin=><LogStash::Outputs::ElasticSearch password=><password>, hosts=>[http://dch789lw5app.svc.ny.gov:9200], index=>"%{[@metadata][beat]}-%{[@metadata][version]}-%{+YYYY.MM.dd}", manage_template=>true, id=>"90566165c0bec981c75a1b741568e553eea7dbfb6c17fe5361fbbd3f047efae6", user=>"elastic", document_type=>"%{[@metadata][type]}", enable_metric=>true, codec=><LogStash::Codecs::Plain id=>"plain_9c8d43d8-bdee-49a4-b19c-fabc93f8ca45", enable_metric=>true, charset=>"UTF-8">, workers=>1, template_name=>"logstash", template_overwrite=>false, doc_as_upsert=>false, script_type=>"inline", script_lang=>"painless", script_var_name=>"event", scripted_upsert=>false, retry_initial_interval=>2, retry_max_interval=>64, retry_on_conflict=>1, action=>"index", ssl_certificate_verification=>true, sniffing=>false, sniffing_delay=>5, timeout=>60, pool_max=>1000, pool_max_per_route=>100, resurrect_delay=>5, validate_after_inactivity=>10000, http_compression=>false>}
[2018-11-29T10:55:17,182][INFO ][logstash.pipeline ] Starting pipeline {:pipeline_id=>"main", "pipeline.workers"=>2, "pipeline.batch.size"=>125, "pipeline.batch.delay"=>50}
[2018-11-29T10:55:18,265][INFO ][logstash.outputs.elasticsearch] Elasticsearch pool URLs updated {:changes=>{:removed=>[], :added=>[http://elastic:xxxxxx@dch789lw5app.svc.ny.gov:9200/]}}
[2018-11-29T10:55:18,338][INFO ][logstash.outputs.elasticsearch] Running health check to see if an Elasticsearch connection is working {:healthcheck_url=>http://elastic:xxxxxx@dch789lw5app.svc.ny.gov:9200/, :path=>"/"}
[2018-11-29T10:55:18,868][WARN ][logstash.outputs.elasticsearch] Restored connection to ES instance {:url=>"http://elastic:xxxxxx@dch789lw5app.svc.ny.gov:9200/"}
[2018-11-29T10:55:18,982][INFO ][logstash.outputs.elasticsearch] ES Output version determined {:es_version=>6}
[2018-11-29T10:55:18,990][WARN ][logstash.outputs.elasticsearch] Detected a 6.x and above cluster: the `type` event field won't be used to determine the document _type {:es_version=>6}
[2018-11-29T10:55:19,042][INFO ][logstash.outputs.elasticsearch] New Elasticsearch output {:class=>"LogStash::Outputs::ElasticSearch", :hosts=>["http://dch789lw5app.svc.ny.gov:9200"]}
[2018-11-29T10:55:19,085][INFO ][logstash.outputs.elasticsearch] Using mapping template from {:path=>nil}
[2018-11-29T10:55:19,138][INFO ][logstash.outputs.elasticsearch] Attempting to install template {:manage_template=>{"template"=>"logstash-*", "version"=>60001, "settings"=>{"index.refresh_interval"=>"5s"}, "mappings"=>{"_default_"=>{"dynamic_templates"=>[{"message_field"=>{"path_match"=>"message", "match_mapping_type"=>"string", "mapping"=>{"type"=>"text", "norms"=>false}}}, {"string_fields"=>{"match"=>"*", "match_mapping_type"=>"string", "mapping"=>{"type"=>"text", "norms"=>false, "fields"=>{"keyword"=>{"type"=>"keyword", "ignore_above"=>256}}}}}], "properties"=>{"@timestamp"=>{"type"=>"date"}, "@version"=>{"type"=>"keyword"}, "geoip"=>{"dynamic"=>true, "properties"=>{"ip"=>{"type"=>"ip"}, "location"=>{"type"=>"geo_point"}, "latitude"=>{"type"=>"half_float"}, "longitude"=>{"type"=>"half_float"}}}}}}}}
[2018-11-29T10:55:20,035][INFO ][logstash.inputs.beats ] Beats inputs: Starting input listener {:address=>"0.0.0.0:5044"}
[2018-11-29T10:55:20,094][INFO ][logstash.pipeline ] Pipeline started successfully {:pipeline_id=>"main", :thread=>"#<Thread:0x5ca9a9aa run>"}
[2018-11-29T10:55:20,207][INFO ][logstash.agent ] Pipelines running {:count=>1, :running_pipelines=>[:main], :non_running_pipelines=>[]}
[2018-11-29T10:55:20,234][INFO ][org.logstash.beats.Server] Starting server on port: 5044
[2018-11-29T10:55:20,759][INFO ][logstash.agent ] Successfully started Logstash API endpoint {:port=>9600}