Looking at the 'pipelines' entries on kibana / clusters / elasticsearch / logstash. I can see the various kubernetes entries here but not the main logstash service running on the same host as elasticsearch.
Is there something I need to do to get it to appear here?
You have to configure logstash with the monitoring xpack 
https://www.elastic.co/guide/en/logstash/current/configuring-logstash.html
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