Xpack configuration settings not accepted ELK 6.3

Elastic Stack Logstash
1

Not sure what is going on. Here is my logstash.yml
xpack.security.enabled: false
xpack.monitoring.enabled: true
xpack.monitoring.elasticsearch.url: "http://localhost:9200"
xpack.watcher.enabled: true
xpack.reporting.enabled: true

But in my logs it is showing this

[2018-07-02T09:59:42,560][DEBUG][logstash.runner          ] xpack.management.enabled: false
[2018-07-02T09:59:42,560][DEBUG][logstash.runner          ] xpack.management.logstash.poll_interval: 5000000000
[2018-07-02T09:59:42,561][DEBUG][logstash.runner          ] xpack.management.pipeline.id: ["main"]
[2018-07-02T09:59:42,561][DEBUG][logstash.runner          ] xpack.management.elasticsearch.username: "logstash_system"
[2018-07-02T09:59:42,561][DEBUG][logstash.runner          ] xpack.management.elasticsearch.url: ["https://localhost:9200"]
[2018-07-02T09:59:42,561][DEBUG][logstash.runner          ] xpack.management.elasticsearch.sniffing: false
[2018-07-02T09:59:42,562][DEBUG][logstash.runner          ] xpack.monitoring.enabled: false
[2018-07-02T09:59:42,562][DEBUG][logstash.runner          ] xpack.monitoring.elasticsearch.url: ["http://localhost:9200"]
[2018-07-02T09:59:42,562][DEBUG][logstash.runner          ] xpack.monitoring.collection.interval: 10000000000
[2018-07-02T09:59:42,563][DEBUG][logstash.runner          ] xpack.monitoring.collection.timeout_interval: 600000000000
[2018-07-02T09:59:42,563][DEBUG][logstash.runner          ] xpack.monitoring.elasticsearch.username: "logstash_system"
[2018-07-02T09:59:42,563][DEBUG][logstash.runner          ] xpack.monitoring.elasticsearch.ssl.verification_mode: "certificate"
[2018-07-02T09:59:42,563][DEBUG][logstash.runner          ] xpack.monitoring.elasticsearch.sniffing: false
[2018-07-02T09:59:42,563][DEBUG][logstash.runner          ] xpack.monitoring.collection.pipeline.details.enabled: true
[2018-07-02T09:59:42,564][DEBUG][logstash.runner          ] xpack.monitoring.collection.config.enabled: true

I also have this above that
[2018-07-02T09:59:40,852][DEBUG][logstash.modules.scaffold] Found module {:module_name=>"x-pack", :directory=>"/usr/share/logstash/modules/x-pack/configuration"}
[2018-07-02T09:59:40,873][DEBUG][logstash.plugins.registry] Adding plugin to the registry {:name=>"x-pack", :type=>:modules, :class=>#<LogStash::Modules::Scaffold:0x48bbcd9d @directory="/usr/share/logstash/modules/x-pack/configuration", @module_name="x-pack", @kibana_version_parts=["6", "0", "0"]>}

I don't have a configuration folder in x-pack and it is in the main logstash folder not modules. Also it is seeing my kibana as 6.0 when it is 6.3

librenms@librenms:/usr/share/logstash/config$ sudo apt-get install kibana
Reading package lists... Done
Building dependency tree
Reading state information... Done
kibana is already the newest version (6.3.0).
0 to upgrade, 0 to newly install, 0 to remove and 6 not to upgrade.
2

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