This problem may have to do with your upgrade. According to the issue below when the field service.node.name is not part of the mapping index this seems to happen. New indices created with the right template should have this field but not older ones.
Thank you for your response @riferrei , all the templates and indices have been updated properly. Actual JVM metrics data is getting reported to the named JVM only, it is just that additional (Empty) JVM is showing up.
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