I had issues getting Discover to allow me to select data from an index pattern, but fixed this by setting my new index pattern as the default. When attempting to create a map layer from this index pattern, it is not listed in the list of available index patterns.
For your indexpattern to appear for a map layer - it needs to have geo data.
Can you check your mapping and see if you have data of type geo_point and geo_shape?
@bhavyarm: I re-created my index with a custom field mapping and was able to create a map visualization. Thank you!
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